Literature DB >> 33482836

One test for all: whole exome sequencing significantly improves the diagnostic yield in growth retarded patients referred for molecular testing for Silver-Russell syndrome.

Robert Meyer1, Matthias Begemann1, Christian Thomas Hübner1, Daniela Dey1, Alma Kuechler2, Magdeldin Elgizouli2, Ulrike Schara3, Laima Ambrozaityte4, Birute Burnyte4, Carmen Schröder5, Asmaa Kenawy6, Peter Kroisel7, Stephanie Demuth8, Gyorgy Fekete9, Thomas Opladen10, Miriam Elbracht1, Thomas Eggermann11.   

Abstract

BACKGROUND: Silver-Russell syndrome (SRS) is an imprinting disorder which is characterised by severe primordial growth retardation, relative macrocephaly and a typical facial gestalt. The clinical heterogeneity of SRS is reflected by a broad spectrum of molecular changes with hypomethylation in 11p15 and maternal uniparental disomy of chromosome 7 (upd(7)mat) as the most frequent findings. Monogenetic causes are rare, but a clinical overlap with numerous other disorders has been reported. However, a comprehensive overview on the contribution of mutations in differential diagnostic genes to phenotypes reminiscent to SRS is missing due to the lack of appropriate tests. With the implementation of next generation sequencing (NGS) tools this limitation can now be circumvented. MAIN BODY: We analysed 75 patients referred for molecular testing for SRS by a NGS-based multigene panel, whole exome sequencing (WES), and trio-based WES. In 21/75 patients a disease-causing variant could be identified among them variants in known SRS genes (IGF2, PLAG1, HMGA2). Several patients carried variants in genes which have not yet been considered as differential diagnoses of SRS.
CONCLUSIONS: WES approaches significantly increase the diagnostic yield in patients referred for SRS testing. Several of the identified monogenetic disorders have a major impact on clinical management and genetic counseling.

Entities:  

Keywords:  Diagnostic detection rate; Next generation sequencing; Silver–Russell syndrome; Targeted multigene panel NGS; Whole exome sequencing

Mesh:

Year:  2021        PMID: 33482836      PMCID: PMC7821667          DOI: 10.1186/s13023-021-01683-x

Source DB:  PubMed          Journal:  Orphanet J Rare Dis        ISSN: 1750-1172            Impact factor:   4.123


  26 in total

Review 1.  A case report and review of the literature indicate that HMGA2 should be added as a disease gene for Silver-Russell syndrome.

Authors:  Gloria Sarah Leszinski; Katharina Warncke; Julia Hoefele; Matias Wagner
Journal:  Gene       Date:  2018-04-12       Impact factor: 3.688

2.  Silver-Russell syndrome-like features in a patient carrying a novel NF1 mutation.

Authors:  Katharina Wimmer; Mathias Decker; Ertan Mayatepek; Harald Beiglböck; Thomas Eggermann; Hildegard Kehrer-Sawatzki; Christa Fonatsch; Thorsten Rosenbaum
Journal:  Pediatr Res       Date:  2005-12       Impact factor: 3.756

3.  Diagnosis and management of Silver-Russell syndrome: first international consensus statement.

Authors:  Emma L Wakeling; Frédéric Brioude; Oluwakemi Lokulo-Sodipe; Susan M O'Connell; Jennifer Salem; Jet Bliek; Ana P M Canton; Krystyna H Chrzanowska; Justin H Davies; Renuka P Dias; Béatrice Dubern; Miriam Elbracht; Eloise Giabicani; Adda Grimberg; Karen Grønskov; Anita C S Hokken-Koelega; Alexander A Jorge; Masayo Kagami; Agnes Linglart; Mohamad Maghnie; Klaus Mohnike; David Monk; Gudrun E Moore; Philip G Murray; Tsutomu Ogata; Isabelle Oliver Petit; Silvia Russo; Edith Said; Meropi Toumba; Zeynep Tümer; Gerhard Binder; Thomas Eggermann; Madeleine D Harbison; I Karen Temple; Deborah J G Mackay; Irène Netchine
Journal:  Nat Rev Endocrinol       Date:  2016-09-02       Impact factor: 43.330

4.  Targeted Next Generation Sequencing Approach in Patients Referred for Silver-Russell Syndrome Testing Increases the Mutation Detection Rate and Provides Decisive Information for Clinical Management.

Authors:  Robert Meyer; Lukas Soellner; Matthias Begemann; Severin Dicks; György Fekete; Nils Rahner; Klaus Zerres; Miriam Elbracht; Thomas Eggermann
Journal:  J Pediatr       Date:  2017-05-19       Impact factor: 4.406

5.  IGF2 Mutations.

Authors:  Yohei Masunaga; Takanobu Inoue; Kaori Yamoto; Yasuko Fujisawa; Yasuhiro Sato; Yuki Kawashima-Sonoyama; Naoya Morisada; Kazumoto Iijima; Yasuhisa Ohata; Noriyuki Namba; Hiroshi Suzumura; Ryota Kuribayashi; Yu Yamaguchi; Hiroshi Yoshihashi; Maki Fukami; Hirotomo Saitsu; Masayo Kagami; Tsutomu Ogata
Journal:  J Clin Endocrinol Metab       Date:  2020-01-01       Impact factor: 5.958

6.  Patient with an autosomal-recessive MBTPS1-linked phenotype and clinical features of Silver-Russell syndrome.

Authors:  Robert Meyer; Miriam Elbracht; Thomas Opladen; Thomas Eggermann
Journal:  Am J Med Genet A       Date:  2020-08-28       Impact factor: 2.802

7.  Site-1 protease deficiency causes human skeletal dysplasia due to defective inter-organelle protein trafficking.

Authors:  Yuji Kondo; Jianxin Fu; Hua Wang; Christopher Hoover; J Michael McDaniel; Richard Steet; Debabrata Patra; Jianhua Song; Laura Pollard; Sara Cathey; Tadayuki Yago; Graham Wiley; Susan Macwana; Joel Guthridge; Samuel McGee; Shibo Li; Courtney Griffin; Koichi Furukawa; Judith A James; Changgeng Ruan; Rodger P McEver; Klaas J Wierenga; Patrick M Gaffney; Lijun Xia
Journal:  JCI Insight       Date:  2018-07-26

8.  A prospective study validating a clinical scoring system and demonstrating phenotypical-genotypical correlations in Silver-Russell syndrome.

Authors:  Salah Azzi; Jennifer Salem; Nathalie Thibaud; Sandra Chantot-Bastaraud; Eli Lieber; Irène Netchine; Madeleine D Harbison
Journal:  J Med Genet       Date:  2015-05-07       Impact factor: 6.318

9.  Clinical relevance of systematic phenotyping and exome sequencing in patients with short stature.

Authors:  Nadine N Hauer; Bernt Popp; Eva Schoeller; Sarah Schuhmann; Karen E Heath; Alfonso Hisado-Oliva; Patricia Klinger; Cornelia Kraus; Udo Trautmann; Martin Zenker; Christiane Zweier; Antje Wiesener; Rami Abou Jamra; Erdmute Kunstmann; Dagmar Wieczorek; Steffen Uebe; Fulvia Ferrazzi; Christian Büttner; Arif B Ekici; Anita Rauch; Heinrich Sticht; Helmuth-Günther Dörr; André Reis; Christian T Thiel
Journal:  Genet Med       Date:  2017-10-12       Impact factor: 8.822

Review 10.  Genetic testing in inherited endocrine disorders: joint position paper of the European reference network on rare endocrine conditions (Endo-ERN).

Authors:  Thomas Eggermann; Miriam Elbracht; Ingo Kurth; Anders Juul; Trine Holm Johannsen; Irène Netchine; George Mastorakos; Gudmundur Johannsson; Thomas J Musholt; Martin Zenker; Dirk Prawitt; Alberto M Pereira; Olaf Hiort
Journal:  Orphanet J Rare Dis       Date:  2020-06-08       Impact factor: 4.123

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  7 in total

1.  Ongoing Challenges in the Diagnosis of 11p15.5-Associated Imprinting Disorders.

Authors:  Deborah J G Mackay; I Karen Temple
Journal:  Mol Diagn Ther       Date:  2022-05-06       Impact factor: 4.074

Review 2.  Comprehensive genetic testing approaches as the basis for personalized management of growth disturbances: current status and perspectives.

Authors:  Danielle Christine Maria van der Kaay; Anne Rochtus; Gerhard Binder; Ingo Kurth; Dirk Prawitt; Irène Netchine; Gudmundur Johannsson; Anita C S Hokken-Koelega; Miriam Elbracht; Thomas Eggermann
Journal:  Endocr Connect       Date:  2022-10-10       Impact factor: 3.221

3.  Microdeletions in 1q21 and 8q12.1 depict two additional molecular subgroups of Silver-Russell syndrome like phenotypes.

Authors:  Naomi Baba; Anna Lengyel; Eva Pinti; Elzem Yapici; Isolde Schreyer; Thomas Liehr; György Fekete; Thomas Eggermann
Journal:  Mol Cytogenet       Date:  2022-05-13       Impact factor: 1.904

Review 4.  Genomics in Egypt: Current Status and Future Aspects.

Authors:  Eman Ahmed El-Attar; Rasha Mohamed Helmy Elkaffas; Sarah Ahmed Aglan; Iman S Naga; Amira Nabil; Hoda Y Abdallah
Journal:  Front Genet       Date:  2022-05-13       Impact factor: 4.772

Review 5.  Growth Restriction and Genomic Imprinting-Overlapping Phenotypes Support the Concept of an Imprinting Network.

Authors:  Thomas Eggermann; Justin H Davies; Maithé Tauber; Erica van den Akker; Anita Hokken-Koelega; Gudmundur Johansson; Irène Netchine
Journal:  Genes (Basel)       Date:  2021-04-17       Impact factor: 4.096

6.  Case report: A novel de novo IGF2 missense variant in a Finnish patient with Silver-Russell syndrome.

Authors:  Petra Loid; Marita Lipsanen-Nyman; Sirpa Ala-Mello; Katariina Hannula-Jouppi; Juha Kere; Outi Mäkitie; Mari Muurinen
Journal:  Front Pediatr       Date:  2022-10-04       Impact factor: 3.569

7.  Screening of patients born small for gestational age with the Silver-Russell syndrome phenotype for DLK1 variants.

Authors:  Aurélie Pham; Marie-Laure Sobrier; Eloïse Giabicani; Marilyne Le Jules Fernandes; Delphine Mitanchez; Fréderic Brioude; Irène Netchine
Journal:  Eur J Hum Genet       Date:  2021-07-19       Impact factor: 4.246

  7 in total

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