Literature DB >> 30608221

Towards understanding of PRC2 binding to RNA.

Junli Yan1, Bibek Dutta2, Yan Ting Hee3, Wee-Joo Chng1,2,4.   

Abstract

Polycomb repressive complex 2 (PRC2) and its methylation of histone 3 at lysine 27 (H3K27me3) play a crucial role in epigenetic regulation of normal development and malignancy. Several factors regulate the recruitment of PRC2 and affects its chromatin modification function. Over the past years, emerging discoveries have portrayed the association of RNA (protein-coding and non-coding) with PRC2 as a critical factor in understanding PRC2 function. With PRC2 being a macromolecular complex of interest in development and diseases, further studies are needed to relate the rapidly evolving PRC2:RNA biology in that scenario. In this review, we summarize the current understanding of different modes of RNA binding by PRC2, and further discuss perspectives, key questions and therapeutic applications of PRC2 binding to RNAs.

Entities:  

Keywords:  PRC2; chromatin; lncRNAs; nascent RNAs; ncRNA; promiscuous binding

Mesh:

Substances:

Year:  2019        PMID: 30608221      PMCID: PMC6380335          DOI: 10.1080/15476286.2019.1565283

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  85 in total

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Authors:  Hualin Xi; Yong Yu; Yutao Fu; Jonathan Foley; Anason Halees; Zhiping Weng
Journal:  Genome Res       Date:  2007-06       Impact factor: 9.043

2.  A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.

Authors:  Eric Conway; Emilia Jerman; Evan Healy; Shinsuke Ito; Daniel Holoch; Giorgio Oliviero; Orla Deevy; Eleanor Glancy; Darren J Fitzpatrick; Marlena Mucha; Ariane Watson; Alan M Rice; Paul Chammas; Christine Huang; Indigo Pratt-Kelly; Yoko Koseki; Manabu Nakayama; Tomoyuki Ishikura; Gundula Streubel; Kieran Wynne; Karsten Hokamp; Aoife McLysaght; Claudio Ciferri; Luciano Di Croce; Gerard Cagney; Raphaël Margueron; Haruhiko Koseki; Adrian P Bracken
Journal:  Mol Cell       Date:  2018-04-05       Impact factor: 17.970

Review 3.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

4.  Targeted disruption of Hotair leads to homeotic transformation and gene derepression.

Authors:  Lingjie Li; Bo Liu; Orly L Wapinski; Miao-Chih Tsai; Kun Qu; Jiajing Zhang; Jeff C Carlson; Meihong Lin; Fengqin Fang; Rajnish A Gupta; Jill A Helms; Howard Y Chang
Journal:  Cell Rep       Date:  2013-09-26       Impact factor: 9.423

5.  Targeting of Polycomb Repressive Complex 2 to RNA by Short Repeats of Consecutive Guanines.

Authors:  Xueyin Wang; Karen J Goodrich; Anne R Gooding; Haroon Naeem; Stuart Archer; Richard D Paucek; Daniel T Youmans; Thomas R Cech; Chen Davidovich
Journal:  Mol Cell       Date:  2017-03-16       Impact factor: 17.970

Review 6.  The Polycomb complex PRC2 and its mark in life.

Authors:  Raphaël Margueron; Danny Reinberg
Journal:  Nature       Date:  2011-01-20       Impact factor: 49.962

Review 7.  Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

Authors:  Shankar Balasubramanian; Laurence H Hurley; Stephen Neidle
Journal:  Nat Rev Drug Discov       Date:  2011-04       Impact factor: 84.694

8.  Conserved RNA-binding specificity of polycomb repressive complex 2 is achieved by dispersed amino acid patches in EZH2.

Authors:  Yicheng Long; Ben Bolanos; Lihu Gong; Wei Liu; Karen J Goodrich; Xin Yang; Siming Chen; Anne R Gooding; Karen A Maegley; Ketan S Gajiwala; Alexei Brooun; Thomas R Cech; Xin Liu
Journal:  Elife       Date:  2017-11-29       Impact factor: 8.140

9.  A Polycomb response element in the Ubx gene that determines an epigenetically inherited state of repression.

Authors:  C S Chan; L Rastelli; V Pirrotta
Journal:  EMBO J       Date:  1994-06-01       Impact factor: 11.598

10.  Polycomb repressive complex 2 structure with inhibitor reveals a mechanism of activation and drug resistance.

Authors:  Alexei Brooun; Ketan S Gajiwala; Ya-Li Deng; Wei Liu; Ben Bolaños; Patrick Bingham; You-Ai He; Wade Diehl; Nicole Grable; Pei-Pei Kung; Scott Sutton; Karen A Maegley; Xiu Yu; Al E Stewart
Journal:  Nat Commun       Date:  2016-04-28       Impact factor: 14.919

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  13 in total

Review 1.  Polycomb repressive 2 complex-Molecular mechanisms of function.

Authors:  Valentina L Kouznetsova; Alex Tchekanov; Xiaoming Li; Xiaowen Yan; Igor F Tsigelny
Journal:  Protein Sci       Date:  2019-06-10       Impact factor: 6.725

2.  DNA Binding Reorganizes the Intrinsically Disordered C-Terminal Region of PSC in Drosophila PRC1.

Authors:  Jin Joo Kang; Denis Faubert; Jonathan Boulais; Nicole J Francis
Journal:  J Mol Biol       Date:  2020-07-03       Impact factor: 5.469

Review 3.  Regulation, functions and transmission of bivalent chromatin during mammalian development.

Authors:  Trisha A Macrae; Julie Fothergill-Robinson; Miguel Ramalho-Santos
Journal:  Nat Rev Mol Cell Biol       Date:  2022-08-26       Impact factor: 113.915

4.  Upregulated Long Non-Coding RNA LL22NC03-N64E9.1 Promotes the Proliferation and Migration of Human Breast Cancer Cells by Silencing Kruppel-Like Factor 2 Expression.

Authors:  Weibin Lian; Xiaohua Jiang; Liangqiang Li; Qinglan Wang; Chengye Hong; Peidong Yang; Debo Chen
Journal:  Cancer Manag Res       Date:  2020-10-29       Impact factor: 3.989

Review 5.  Epigenetic regulation of dental pulp stem cells and its potential in regenerative endodontics.

Authors:  Ying Liu; Lu Gan; Di-Xin Cui; Si-Han Yu; Yue Pan; Li-Wei Zheng; Mian Wan
Journal:  World J Stem Cells       Date:  2021-11-26       Impact factor: 5.326

Review 6.  Differential expression of long non-coding RNAs as diagnostic markers for lung cancer and other malignant tumors.

Authors:  Li Li; Haitao Wei; Yi Wei Zhang; Shizhe Zhao; Guowei Che; Yun Wang; Longqi Chen
Journal:  Aging (Albany NY)       Date:  2021-10-20       Impact factor: 5.682

7.  Mechanistic Dissection of RNA-Binding Proteins in Regulated Gene Expression at Chromatin Levels.

Authors:  Jia-Yu Chen; Do-Hwan Lim; Xiang-Dong Fu
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2020-01-03

8.  Long noncoding RNA ARHGAP27P1 inhibits gastric cancer cell proliferation and cell cycle progression through epigenetically regulating p15 and p16.

Authors:  Guohua Zhang; Ying Xu; Chen Zou; Yinbing Tang; Jiawei Lu; Zhigang Gong; Gui Ma; Wenbo Zhang; Pengcheng Jiang
Journal:  Aging (Albany NY)       Date:  2019-10-30       Impact factor: 5.682

9.  Ppp1r1b-lncRNA inhibits PRC2 at myogenic regulatory genes to promote cardiac and skeletal muscle development in mouse and human.

Authors:  Xuedong Kang; Yan Zhao; Glen Van Arsdell; Stanley F Nelson; Marlin Touma
Journal:  RNA       Date:  2020-01-17       Impact factor: 4.942

10.  Caenorhabditis elegans Deficient in DOT-1.1 Exhibit Increases in H3K9me2 at Enhancer and Certain RNAi-Regulated Regions.

Authors:  Ruben Esse; Alla Grishok
Journal:  Cells       Date:  2020-08-06       Impact factor: 6.600

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