Literature DB >> 30590568

One Hundred Mitochondrial Genomes of Cicadas.

Piotr Łukasik1, Rebecca A Chong2, Katherine Nazario3, Yu Matsuura4, De Anna C Bublitz1, Matthew A Campbell1, Mariah C Meyer1, James T Van Leuven1, Pablo Pessacq5, Claudio Veloso6, Chris Simon3, John P McCutcheon1.   

Abstract

Mitochondrial genomes can provide valuable information on the biology and evolutionary histories of their host organisms. Here, we present and characterize the complete coding regions of 107 mitochondrial genomes (mitogenomes) of cicadas (Insecta: Hemiptera: Auchenorrhyncha: Cicadoidea), representing 31 genera, 61 species, and 83 populations. We show that all cicada mitogenomes retain the organization and gene contents thought to be ancestral in insects, with some variability among cicada clades in the length of a region between the genes nad2 and cox1, which encodes 3 tRNAs. Phylogenetic analyses using these mitogenomes recapitulate a recent 5-gene classification of cicadas into families and subfamilies, but also identify a species that falls outside of the established taxonomic framework. While protein-coding genes are under strong purifying selection, tests of relative evolutionary rates reveal significant variation in evolutionary rates across taxa, highlighting the dynamic nature of mitochondrial genome evolution in cicadas. These data will serve as a useful reference for future research into the systematics, ecology, and evolution of the superfamily Cicadoidea. © The American Genetic Association 2018. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Auchenorrhyncha; cicadas; endosymbiosis; intergenic spacer; mitochondria; mitogenome; organelle

Year:  2019        PMID: 30590568      PMCID: PMC6784412          DOI: 10.1093/jhered/esy068

Source DB:  PubMed          Journal:  J Hered        ISSN: 0022-1503            Impact factor:   2.645


  73 in total

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2.  An evolutionary footprint of age-related natural selection in mitochondrial DNA.

Authors:  Xiang Jia Min; Donal A Hickey
Journal:  J Mol Evol       Date:  2008-09-23       Impact factor: 2.395

3.  A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification.

Authors:  David C Marshall; Max Moulds; Kathy B R Hill; Benjamin W Price; Elizabeth J Wade; Christopher L Owen; Geert Goemans; Kiran Marathe; Vivek Sarkar; John R Cooley; Allen F Sanborn; Krushnamegh Kunte; Martin H Villet; Chris Simon
Journal:  Zootaxa       Date:  2018-05-28       Impact factor: 1.091

4.  jModelTest 2: more models, new heuristics and parallel computing.

Authors:  Diego Darriba; Guillermo L Taboada; Ramón Doallo; David Posada
Journal:  Nat Methods       Date:  2012-07-30       Impact factor: 28.547

5.  Sympatric speciation in a bacterial endosymbiont results in two genomes with the functionality of one.

Authors:  James T Van Leuven; Russell C Meister; Chris Simon; John P McCutcheon
Journal:  Cell       Date:  2014-08-28       Impact factor: 41.582

6.  Increased genetic diversity in mitochondrial genes is correlated with the evolution of parasitism in the Hymenoptera.

Authors:  M Dowton; A D Austin
Journal:  J Mol Evol       Date:  1995-12       Impact factor: 2.395

7.  tRNA punctuation model of RNA processing in human mitochondria.

Authors:  D Ojala; J Montoya; G Attardi
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

8.  Evidence of selection upon genomic GC-content in bacteria.

Authors:  Falk Hildebrand; Axel Meyer; Adam Eyre-Walker
Journal:  PLoS Genet       Date:  2010-09-09       Impact factor: 5.917

9.  Ancient hybridization and mitochondrial capture between two species of chipmunks.

Authors:  Jeffrey M Good; Sarah Hird; Noah Reid; John R Demboski; Scott J Steppan; Tina R Martin-Nims; Jack Sullivan
Journal:  Mol Ecol       Date:  2008-03       Impact factor: 6.185

10.  Updating our view of organelle genome nucleotide landscape.

Authors:  David Roy Smith
Journal:  Front Genet       Date:  2012-09-11       Impact factor: 4.599

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  5 in total

1.  Long-read Sequencing Data Reveals Dynamic Evolution of Mitochondrial Genome Size and the Phylogenetic Utility of Mitochondrial DNA in Hercules Beetles (Dynastes; Scarabaeidae).

Authors:  Brett Morgan; Tzi-Yuan Wang; Yi-Zhen Chen; Victor Moctezuma; Oscar Burgos; My Hanh Le; Jen-Pan Huang
Journal:  Genome Biol Evol       Date:  2022-10-07       Impact factor: 4.065

2.  Comparative Mitogenomics in Hyalella (Amphipoda: Crustacea).

Authors:  Francesco Zapelloni; José A Jurado-Rivera; Damià Jaume; Carlos Juan; Joan Pons
Journal:  Genes (Basel)       Date:  2021-02-19       Impact factor: 4.096

3.  The Complete Mitochondrial Genome of Four Hylicinae (Hemiptera: Cicadellidae): Structural Features and Phylogenetic Implications.

Authors:  Jiu Tang; Weijian Huang; Yalin Zhang
Journal:  Insects       Date:  2020-12-07       Impact factor: 2.769

4.  Comprehensive Analyses of the Complete Mitochondrial Genome of Figulus binodulus (Coleoptera: Lucanidae).

Authors:  Jungmo Lee; Jonghyun Park; Hong Xi; Jongsun Park
Journal:  J Insect Sci       Date:  2020-09-01       Impact factor: 1.857

5.  Characterization, Comparison of Four New Mitogenomes of Centrotinae (Hemiptera: Membracidae) and Phylogenetic Implications Supports New Synonymy.

Authors:  Ruitao Yu; Leining Feng; Christopher H Dietrich; Xiangqun Yuan
Journal:  Life (Basel)       Date:  2022-01-03
  5 in total

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