| Literature DB >> 35054454 |
Ruitao Yu1, Leining Feng1, Christopher H Dietrich2, Xiangqun Yuan1.
Abstract
To explore the phylogenetic relationships of the subfamily Centrotinae from the mitochondrial genome data, four complete mitogenomes (Anchon lineatus, Anchon yunnanensis, Gargara genistae and Tricentrus longivalvulatus) were sequenced and analyzed. All the newly sequenced mitogenomes contain 37 genes. Among the 13 protein-coding genes (PCGs) of the Centrotinae mitogenomes, a sliding window analysis and the ratio of Ka/Ks suggest that atp8 is a relatively fast evolving gene, while cox1 is the slowest. All PCGs start with ATN, except for nad5 (start with TTG), and stop with TAA or the incomplete stop codon T, except for nad2 and cytb (terminate with TAG). All tRNAs can fold into the typical cloverleaf secondary structure, except for trnS1, which lacks the dihydrouridine (DHU) arm. The BI and ML phylogenetic analyses of concatenated alignments of 13 mitochondrial PCGs among the major lineages produce a well-resolved framework. Phylogenetic analyses show that Membracoidea, Smiliinae and Centrotinae, together with tribes Centrotypini and Leptobelini are recovered as well-supported monophyletic groups. The tribe Gargarini (sensu Wallace et al.) and its monophyly are supported.Entities:
Keywords: Gargarini; mitochondrial DNA; new synonymy; phylogenetic analysis; treehopper
Year: 2022 PMID: 35054454 PMCID: PMC8777817 DOI: 10.3390/life12010061
Source DB: PubMed Journal: Life (Basel) ISSN: 2075-1729
Collection information of the Centrotinae species sequenced this study.
| Organism | Locality | Time | Collector |
|---|---|---|---|
|
| Jinghong, Yunnan | 8 July 2017 | Hu-Kai |
|
| Jinghong, Yunnan | 9 July 2017 | Hu-Kai |
|
| Northwest A&F University, Yangling, Shaanxi | 13 June 2018 | Hu-Kai |
|
| Ruyuan, Guangdong | 24 July 2020 | Yu-Ruitao |
The mitogenomic sequences used in this study.
| Superfamily | Family/Subfamily | Species | Accession Number | Reference |
|---|---|---|---|---|
| Outgroup | ||||
| Cercopoidea | Aphrophoridae/Aphrophorinae |
| NC_005944 | [ |
| Cercopidae/Callitettixinae |
| NC_025497 | [ | |
| Cicadoidea | Cicadidae/Cicadettinae |
| MH937705 | [ |
| Tettigarctidae/Tettigarctinae |
| MG737758 | [ | |
| Ingroup | ||||
| Membracoidea | Cicadellidae/Cicadellinae |
| KU167550 | Unpublished |
|
| KY752061 | Unpublished | ||
|
| NC_006899 | Unpublished | ||
|
| MK738125 | Unpublished | ||
|
| NC_036015 | [ | ||
| Cicadellidae/Deltocephalinae |
| NC_028154 | [ | |
|
| NC_036298 | [ | ||
|
| NC_034781 | [ | ||
|
| NC_039560 | [ | ||
|
| NC_036296 | [ | ||
|
| NC_026977 | Unpublished | ||
|
| KY817243 | [ | ||
|
| KY817244 | [ | ||
|
| KY817245 | [ | ||
| KT827824 | [ | |||
|
| NC_036131 | [ | ||
| Cicadellidae/Evacanthinae |
| MK948205 | [ | |
|
| MG813486 | [ | ||
| Cicadellidae/Iassinae |
| MG813489 | [ | |
|
| MN577633 | [ | ||
|
| MN577635 | [ | ||
|
| NC_046068 | [ | ||
|
| NC_036480 | [ | ||
| Cicadellidae/Idiocerinae |
| NC_039741 | [ | |
|
| NC_039642 | [ | ||
|
| MH492317 | [ | ||
|
| NC_029203 | [ | ||
|
| NC_039427 | [ | ||
| Cicadellidae/Ledrinae |
| MK387845 | [ | |
|
| MT610899 | [ | ||
|
| MN920440 | Unpublished | ||
|
| MT610900 | [ | ||
| Cicadellidae/Megophthalminae |
| NC_035684 | [ | |
|
| NC_035685 | [ | ||
| Cicadellidae/Typhlocybinae |
| MN661136 | Unpublished | |
|
| MT350235 | Unpublished | ||
|
| NC_037210 | [ | ||
|
| MN604278 | [ | ||
|
| MN699874 | [ | ||
|
| NC_046037 | [ | ||
|
| NC_047465 | [ | ||
|
| NC_047464 | [ | ||
| Aetalionidae/Aetalioninae |
| NC_026699 | [ | |
| Membracidae/Smiliinae |
| NC_033539 | [ | |
|
| MW342606 | [ | ||
| Membracidae/Centrotinae |
| MZ504904 | This study | |
|
| MZ504905 | This study | ||
|
| MZ504906 | This study | ||
|
| MK746135 | [ | ||
|
| JF801955 | [ | ||
| JQ910984 | [ | |||
|
| MK746137 | [ | ||
|
| MK746136 | [ | ||
|
| MZ504907 | This study | ||
|
| MK746138 | [ |
Figure 1Circular maps of the mitogenomes of A. lineatus, A. yunnanensis, G. genistae and T. longivalvulatus.
Figure 2Relative synonymous codon usage (RSCU) of the mitogenomes of four Centrotinae species.
Figure 3Nucleotide diversity (Pi) (A) and genetic distance and ratio of non-synonymous (Ka) to synonymous (Ks) substitution rates (B) of PCGs from four Centrotinae mitogenomes.
Figure 4ML tree inferred from IQ-TREE analyses. Numbers on nodes are the bootstrap support values (BS).
Figure 5BI tree inferred from MrBayes analyses. Numbers on nodes are the Bayesian posterior probabilities (PP).