Literature DB >> 35054454

Characterization, Comparison of Four New Mitogenomes of Centrotinae (Hemiptera: Membracidae) and Phylogenetic Implications Supports New Synonymy.

Ruitao Yu1, Leining Feng1, Christopher H Dietrich2, Xiangqun Yuan1.   

Abstract

To explore the phylogenetic relationships of the subfamily Centrotinae from the mitochondrial genome data, four complete mitogenomes (Anchon lineatus, Anchon yunnanensis, Gargara genistae and Tricentrus longivalvulatus) were sequenced and analyzed. All the newly sequenced mitogenomes contain 37 genes. Among the 13 protein-coding genes (PCGs) of the Centrotinae mitogenomes, a sliding window analysis and the ratio of Ka/Ks suggest that atp8 is a relatively fast evolving gene, while cox1 is the slowest. All PCGs start with ATN, except for nad5 (start with TTG), and stop with TAA or the incomplete stop codon T, except for nad2 and cytb (terminate with TAG). All tRNAs can fold into the typical cloverleaf secondary structure, except for trnS1, which lacks the dihydrouridine (DHU) arm. The BI and ML phylogenetic analyses of concatenated alignments of 13 mitochondrial PCGs among the major lineages produce a well-resolved framework. Phylogenetic analyses show that Membracoidea, Smiliinae and Centrotinae, together with tribes Centrotypini and Leptobelini are recovered as well-supported monophyletic groups. The tribe Gargarini (sensu Wallace et al.) and its monophyly are supported.

Entities:  

Keywords:  Gargarini; mitochondrial DNA; new synonymy; phylogenetic analysis; treehopper

Year:  2022        PMID: 35054454      PMCID: PMC8777817          DOI: 10.3390/life12010061

Source DB:  PubMed          Journal:  Life (Basel)        ISSN: 2075-1729


1. Introduction

Membracidae (Hemiptera: Cicadomorpha: Membracoidea) is a relatively large and widespread family within the superfamily Membracoidea, currently comprising approximately 3450 species, 428 genera and 9 subfamilies worldwide. Centrotinae, the largest and the only cosmopolitan subfamily, comprises nearly 1350 species and 216 genera. These taxa above are mainly distributed in the New World, while a buffalo treehopper species, Stictocephala bisonia (Kopp & Yonke, 1977), is currently widespread in Europe and Asia after being introduced by accident [1,2,3]. Some species are well-documented agricultural pests. For example, S. bisonia causes apple and other fruit trees to wilt by laying eggs in the twigs of those trees, Spissistilus festinus (Say) may infest soybeans with such large populations that ovipositional scars can impact yields, and Metcalfiella monogramma (Germar) may cause similar damage in avocados [4,5]. Though many phylogenetic studies of higher taxa of Membracoidea (leafhoppers and treehoppers) have been conducted [6,7,8,9,10,11], most have focused on the relationships between subfamilies or tribes within Cicadellidae, while the relationships among tribes and genera of the family Membracidae remain very poorly understood. Although the monophyly of Membracoidea (sensu lato, including Cicadellidae) has been well supported by previous analyses that sampled broadly across Membracoidea or Auchenorrhyncha [12,13], Membracidae (sensu Deitz & Dietrich, 1993) has not been consistently recovered as monophyletic in some recent analyses [9,10,14,15]. Some analyses have also suggested that the largest membracid subfamily, Centrotinae, is paraphyletic [9,10,14,16]. The only detailed phylogenetic analysis of relationships within Centrotinae was based on morphology [3] and their hypothesis has not yet been tested by incorporating molecular data. The recent anchored hybrid-based phylogenomic analysis of Membracoidea [12] recovered Centrotinae as a monophyletic group with strong support and suggested that Centrotinae arose in the New World and later colonized the Old World. Further analyses incorporating more taxa are needed to provide a more robust estimate of relationships among tribes within Centrotinae. Due to the innovation of next-generation sequencing (NGS), the mitogenome has become an important molecular indicator in the study of insect systematics and has been widely used in phylogenetic studies of different taxa levels with various insects because of its maternal inheritance, compositional stability and genetic conservation [17,18,19]. Although some studies have indicated that the mitogenome itself is insufficient to resolve the higher-level phylogeny of Auchenorrhyncha [20,21,22], analyses based on the complete sequence of mitochondrial DNA may still help to resolve the ongoing controversies in the classification and the phylogenetic relationships of the Centrotinae.

2. Materials and Methods

2.1. Specimen Acquisition

The detailed species list of the adult Centrotinae used in the study is shown in Table 1. All the treehoppers were immersed in 100% ethyl ethanol after capture and stored at a −20 degrees Celsius freezer to preserve the DNA, and the specimens were identified based on morphological taxonomic characters [23]. All experimental insects were preserved at the Entomological Museum of Northwest A&F University.
Table 1

Collection information of the Centrotinae species sequenced this study.

OrganismLocalityTimeCollector
Anchon lineatus Jinghong, Yunnan8 July 2017Hu-Kai
Anchon yunnanensis Jinghong, Yunnan9 July 2017Hu-Kai
Gargara genistae Northwest A&F University, Yangling, Shaanxi13 June 2018Hu-Kai
Tricentrus longivalvulatus Ruyuan, Guangdong24 July 2020Yu-Ruitao

2.2. DNA Extraction, Mitogenome Sequencing, Assembly and Annotation

For sequencing mitogenomes, we used DNeasy DNA Extraction Kit (Qiagen) to extract the total genomic DNA from thoracic muscle tissues. The NGS (Illumina HiSeq X; Biomarker Tech, Beijing, China) was employed to determine the four mitogenomes of Centrotinae. A total of 16,902,362/13,815,488/20,016,944/13,564,230 clean paired reads, then assembled using Geneious 9.0.2 [24] with the mitogenomes of Leptobelus gazella (JF801955) and Tricentrus brunneus (MK746138) were employed as references. The annotation of the mitogenomes was performed using Geneious 9.0.2. Furthermore, the MITOS Web Server (Leipzig, Germany) [25], with the invertebrate mitochondrial genetic code (transl_table = 5), was made a forecast for the position and secondary structure of the tRNA, and Adobe Illustrator 2021 was employed to draw manually as the predicted results show. The PCGs boundaries were recognized by the open reading frames (ORFs) employing translation table 5 and alignment with homologous reference sequences was performed in Geneious 9.0.2. In addition, CGView Server (http://cgview.ca/ (accessed on 26 June 2021)) [26] was used to generate the mitogenome maps online.

2.3. Bioinformatic Analysis

The base composition and relative synonymous codon usage (RSCU) values were computed using RStudio Desktop 1.4.1106 [27] and PhyloSuite v1.2.2 [28]. DnaSP v6 [29] was utilized to conduct the sliding window analysis (a sliding window of 200 bp and step size of 20 bp) and calculate the nucleotide diversity (Pi value) and the ratio of non-synonymous substitution rate (Ka) to synonymous substitution rate (Ks) of aligned PCGs. Genetic distances based on the PCGs were estimated employing MEGA X [30] with Kimura 2-parameter. Prism 9.0.0 was used to plot graphically the genetic distances and Ka/Ks ratios. The Centrotinae species (A. lineatus, A. yunnanensis, G. genistae and T. longivalvulatus) mitogenome sequences were uploaded on GenBank with accession numbers MZ504904, MZ504905, MZ504906, and MZ504907, respectively (Table 2).
Table 2

The mitogenomic sequences used in this study.

SuperfamilyFamily/SubfamilySpeciesAccession NumberReference
Outgroup
CercopoideaAphrophoridae/Aphrophorinae Philaenus spumarius NC_005944[38]
Cercopidae/Callitettixinae Callitettix braconoides NC_025497[39]
Cicadoidea Cicadidae/Cicadettinae Magicicada tredecula MH937705[40]
Tettigarctidae/Tettigarctinae Tettigarcta crinita MG737758[41]
Ingroup
MembracoideaCicadellidae/Cicadellinae Bothrogonia ferruginea KU167550Unpublished
Cicadella viridis KY752061Unpublished
Homalodisca vitripennis NC_006899Unpublished
Olidiana ritcheriina MK738125Unpublished
Taharana fasciana NC_036015[42]
Cicadellidae/Deltocephalinae Drabescoides nuchalis NC_028154[43]
Japananus hyalinus NC_036298[44]
Macrosteles quadrilineatus NC_034781[45]
Macrosteles quadrimaculatus NC_039560[46]
Maiestas dorsalis NC_036296[44]
Nephotettix cincticeps NC_026977Unpublished
Scaphoideus maai KY817243[47]
Scaphoideus nigrivalveus KY817244[47]
Scaphoideus varius KY817245[47]
Tambocerus sp.KT827824[48]
Yanocephalus yanonis NC_036131[47]
Cicadellidae/Evacanthinae Evacanthus acuminatus MK948205[49]
Evacanthus heimianus MG813486[50]
Cicadellidae/Iassinae Batracomorphus lateprocessus MG813489[51]
Gessius rufidorsus MN577633[51]
Krisna concava MN577635[51]
Krisna rufimarginata NC_046068[51]
Trocnadella arisana NC_036480[51]
Cicadellidae/Idiocerinae Idiocerus laurifoliae NC_039741[52]
Idioscopus clypealis NC_039642[53]
Idioscopus myrica MH492317[52]
Idioscopus nitidulus NC_029203[54]
Populicerus populi NC_039427[52]
Cicadellidae/Ledrinae Ledra auditura MK387845[55]
Petalocephala chlorophana MT610899[56]
Tituria pyramidata MN920440Unpublished
Tituria sagittata MT610900[56]
Cicadellidae/Megophthalminae Durgades nigropicta NC_035684[57]
Japanagallia spinosa NC_035685[57]
Cicadellidae/Typhlocybinae Bolanusoides shaanxiensis MN661136Unpublished
Empoascanara dwalata MT350235Unpublished
Empoasca onukii NC_037210[58]
Empoascanara sipra MN604278[59]
Ghauriana sinensis MN699874[60]
Limassolla lingchuanensis NC_046037[61]
Mitjaevia protuberanta NC_047465[62]
Paraahimia luodianensis NC_047464[63]
Aetalionidae/Aetalioninae Darthula hardwickii NC_026699[64]
Membracidae/Smiliinae Entylia carinata NC_033539[65]
Stictophala bisonia MW342606[66]
Membracidae/Centrotinae Anchon lineatus MZ504904This study
Anchon yunnanensis MZ504905This study
Gargara genistae MZ504906This study
Hypsauchenia hardwichii MK746135[2]
Leptobelus gazella JF801955[67]
Leptobelus sp.JQ910984[68]
Leptocentrus albolineatus MK746137[2]
Maurya qinlingensis MK746136[2]
Tricentrus longivalvulatus MZ504907This study
Tricentrus brunneus MK746138[2]

2.4. Phylogenetic Analysis

For phylogenetic analysis, 55 species of Membracoidea (42 leafhoppers and 13 treehoppers) representing 12 subfamilies in 3 families were considered as ingroups. Outgroups are four representative species from four families in two different superfamilies: Philaenus spumarius (Cercopoidea: Aphrophoridae: Aphrophorinae), Callitettix braconoides (Cercopoidea: Cercopidae: Callitettixinae), Magicicada tredecula (Cicadoidea: Cicadidae: Cicadettinae) and Tettigarcta crinita (Cicadoidea: Tettigarctidae: Tettigarctinae). All species sequences are available on GenBank (Table 2). PhyloSuite v1.2.2 was employed to extract the genes. Alignments of all 13 PCGs and 2 rRNA genes were based on Q-INS-i strategy and G-INS-i strategy, respectively, using the MAFFT v7.313 plugin [31] in PhyloSuite. Gblocks 0.91b [32] was used to remove poorly aligned regions. Moreover, MEGA X was used to check and correct all alignments manually. Then, all correctly aligned gene sequences of each species were concatenated. Based on the PCG123 dataset (all codon positions of the 13 PCGs), phylogenetic reconstruction was performed. The best-fit partitioning strategies were determined by PartitionFinder 2 plugin integrated into PhyloSuite [33] employing the “greedy” algorithm and Bayesian information criterion (BIC) (shown in Tables S1 and S2). IQ-TREE v.1.6.8 was employed to perform a maximum likelihood (ML) analysis [34]. Bootstrap support (BS) was assessed under 1000 ultrafast bootstraps (UFB) replicates [35]. Bayesian inference (BI) analysis was performed using MrBayes v3.2.6 [36] with default settings and Markov chain Monte Carlo (MCMC) runs were performed for 5 × 106 generations sampling every 1000 generations, with the first 25% discarded as burn-in, as implemented in the CIPRES Science Gateway [37]. The mitogenomic sequences used in this study.

3. Results

3.1. Genome Organization and Base Composition

The newly sequenced mitogenomes of A. lineatus, A. yunnanensis, G. genistae and T. longivalvulatus were all double-stranded, circular molecules, with the total lengths of 16,218 bp, 14,775 bp, 15,829 bp and 15,325 bp, respectively (Figure 1). Among the 4 complete mitogenomes of Centrotinae, A. yunnanensis had the smallest mitogenome at 14,775 bp, while A. lineatus had the largest at 16,218 bp. Variation in the length of mitogenomes is primarily caused by the variable non-coding region. All mitogenomes included the 37 typical invertebrate mitochondrial genes (13 PCGs, 22 tRNA genes and 2 rRNA genes) and all the genes were identified (Figure 1). There were 23 genes on the majority strand (J-strand), whereas 14 genes were located on the minority strand (N-strand) (Tables S4–S7). The gene order and organization of the four newly determined Centrotinae have high consistency compared with the typical previously reported membracid species. The base composition of total genome of A. lineatus is A (45.3%), T (31.1%), C (14.4%) and G (9.2%); A. yunnanensis is A (45.3%), T (31.0%), C (14.5%) and G (9.2%); G. genistae is A (43.0%), T (34.0%), C (12.0%) and G (10.9%); and A (44.2%), T (32.7%), C (13.6%) and G (9.6%) in T. longivalvulatus (see Table S3). Similar to other Membracidae mitogenomes, the four mitogenomes are highly AT biased, with 76.4% in A. lineatus, 76.3% in A. yunnanensis, 77.0% in G. genistae, and 76.9% in T. longivalvulatus. All mitogenomes show a strong AT bias and a positive AT-skew and CG-skew (Table S3).
Figure 1

Circular maps of the mitogenomes of A. lineatus, A. yunnanensis, G. genistae and T. longivalvulatus.

3.2. Protein-Coding Genes and Codon Usage

The total lengths of the 13 PCGs of A. lineatus, A. yunnanensis, G. genistae and T. longivalvulatus are 10,908 bp, 10,902 bp, 10,920 bp and 10,911 bp, respectively (Table S3). In the 4 newly sequenced mitogenomes, 9 of the 13 PCGs are located on the J-strand and others are on the N-strand. The AT-skews are −0.12, −0.117, −0.14, and −0.148, respectively (Table S3). Except for nad5 in A. yunnanensis and T. longivalvulatus (using TTG as start codon), most PCGs start with ATN as in the previously reported Centrotinae Hypsauchenia hardwickii, Maurya qinlingensis (MK746136), Tricentrus brunneus (MK746138), Leptocentrus albolineatus (MK746137) and Leptobelus sp. HL-2012 (JQ910984). The typical codon TAA and incomplete single T (mostly occurring on cox1, cox2, nad5) were used as the stop codon. It is worth mentioning that nad2 and cytb in A. lineatus, A. yunnanensis and G. genistae use TAG as a termination. The stop codon TAA is used more frequently than TAG, and three single Ts are present at least in all four Centrotinae mitogenomes (Tables S4–S7). Such incomplete termination codons occur universally in insect mitogenomes; they are thought to be completed by post-transcriptional polyadenylation modification during mRNA maturation. The RSCU values and the amino acid compositions are shown in Figure 2. AUU (Ile), UUA (Leu2), UUU (Phe) and AUA (Met) are the most frequently used codons with only component A or U. The third codon is biased toward A or T (Figure 2), which shows the A + T bias of the protein-coding genes in mitogenomes among Centrotinae.
Figure 2

Relative synonymous codon usage (RSCU) of the mitogenomes of four Centrotinae species.

3.3. Transfer and Ribosomal RNA Genes

The 22 transfer RNA genes (tRNAs) of each species discontinuously appeared over the whole mitogenome (Tables S4–S7). The lengths of the tRNA regions of these mitogenomes are similar with 1413 bp in A. lineatus, 1415 bp in A. yunnanensis, 1402 bp in G. genistae and 1393 bp in T. longivalvulatus. The AT content (ranging from 78.6% to 79.8%) of the tRNA is moderately higher than that (ranging from 74.8% to 77.0%) of the PCGs (Table S3). The positions of the 22 tRNAs are identified in the same relative genomic positions as previously determined Membracidae. The lengths of these 22 tRNA genes range from 60 bp (trnG) to 70 bp (trnK) in A. lineatus, from 61 bp (trnG, trnH, and trnT) to 70 bp (trnK) in A. yunnanensis, from 59 bp (trnT) to 71 bp (trnK) in G. genistae, and from 60 bp (trnC and trnR) to 71 bp (trnK) in T. longivalvulatus. As presented in Figures S1–S4, all tRNAs exhibit typical clover-leaf secondary structure, but trnS1 (AGN) lacks the dihydrouridine (DHU) arm, as identified in other membracoid species. The phenomenon of lacking is also generally found in metazoan mitochondrial genomes [69]. There are eight mismatched types (G–U, U–U, A–A, A–C, A–G, G–G, single U and single A) of incorrectly paired bases in these four mitogenomes. A total of 25 weak-bonded G–U, 7 mismatched U–U, 5 mismatched A–A, 2 mismatched A–C, 1 mismatched A–G and 1 mismatched G–G are found in A. lineatus. A total of 25 weak-bonded G–U, 11 mismatched U–U, 5 mismatched A–A, 1 mismatched A–C, and 1 mismatched A–G are found in A. yunnanensis. Furthermore, 31 weak-bonded G–U, 11 mismatched U–U, 2 mismatched A–A, 1 mismatched A–G, 1 single A and U are found in G. genistae, and 25 weak-bonded G–U, 12 mismatched U–U, 3 mismatched A–C, 1 mismatched A–G, and 1 mismatched A–A are discovered in T. longivalvulatus. In the four newly sequenced mitogenomes, two rRNA genes (rrnL and rrnS) were found to be encoded on the N-strand. The rrnLs are 1162/1162/1171/1154 bp (A. lineatus/A. yunnanensis/G. genistae/T. longivalvulatus, respectively) in size, located between trnL1 (CUN) and trnV, while the rrnSs are 824/736/739/736 bp (A. lineatus/A. yunnanensis/G. genistae/T. longivalvulatus, respectively) in size and reside between trnV and control region (Tables S4–S7). The two genes have a negative AT skew (ranging from −0.220 to −0.189) and positive GC skew (ranging from 0.240 to 0.276) in these four mitogenomes (Table S3).

3.4. Gene Overlaps

A total of 17/16/16/11 gene overlaps occur in the A. lineatus/A. yunnanensis/G. genistae/T. longivalvulatus mitogenomes, respectively, with sizes from 1 bp to 14 bp. The largest overlap found of the four mitogenomes is 14 bp, between nad6 and cytb, occurring in G. genistae (Tables S4–S7). One identical overlap in nad6-cytb (ATGAATAA) is found in all four Centrotinae species. There are 6/4/8/9 intergenic spacers in the four mitogenomes, respectively, ranging from 1 bp to 27 bp and the longest intergenic spacer is between trnQ and trnM in T. longivalvulatus (Tables S4–S7). None of the newly sequenced mitogenomes share an identical intergenic spacer.

3.5. Non-Coding Regions

The control region is considered as the longest non-coding region in the sequenced mitogenomes. The lengths are 1940 bp in A. lineatus, 570 bp in A. yunnanensis, 1633 bp in G. genistae, and 1099 bp in T. longivalvulatus (Table S3). The A + T contents are 79.8% in A. lineatus, 90.7% in A. yunnanensis, 71.7% in G. genistae and 83.8% in T. longivalvulatus.

3.6. Nucleotide Diversity and Evolutionary Rate Analysis

Nucleotide diversity of the 13 PCGs by sliding window analysis is shown in Figure 3A. Genes atp8, nad2, atp6, and nad6 have relatively high nucleotide diversities of 0.335, 0.290, 0.270, and 0.246, respectively, while genes cox1, nad1, cox2, and nad3 have comparatively low nucleotide diversities of 0.178, 0.193, 0.196, and 0.196, respectively. Pairwise genetic distance analysis also presents similar results with high distances of 0.46, 0.39, 0.34, and 0.32 for atp8, nad2, atp6, and nad6, respectively, and low distances of 0.21, 0.24, 0.24, and 0.27 for cox1, nad1, cox2, and nad3, separately (Figure 3B).
Figure 3

Nucleotide diversity (Pi) (A) and genetic distance and ratio of non-synonymous (Ka) to synonymous (Ks) substitution rates (B) of PCGs from four Centrotinae mitogenomes.

The ratio of Ka/Ks (ω) was calculated to further analyze the evolutionary rate of 13 protein coding genes. The Ka/Ks values range from 0.11 to 0.66, implying that PCGs are evolving under a purifying selection. Genes, such as atp8, nad6, nad4 and nad4L, show relatively high Ka/Ks ratios of 0.66, 0.63, 0.62 and 0.6, respectively, suggesting that they have undergone comparatively weak purifying pressure, while cox1, cytb, cox3 and cox2 demonstrate fairly low values of 0.11, 0.19, 0.21 and 0.27, separately, which shows these genes are likely to be under the strongest purifying selection (Figure 3B).

3.7. Phylogenetic Relationships

The phylogenetic analyses of 59 species of Cercopoidea, Cicadoidea, and Membracoidea inferred based on ML and BI analyses of the PCG123 dataset yielded highly congruent topologies, with most branches receiving strong support (Figure 4 and Figure 5). The monophyly of Membracoidea was recovered (BS = 100, PP = 1). Membracoidea was divided into two major clades. One clade composed of the eleven Deltocephalinae species formed a sister group to a second group comprised of the remaining leafhoppers and all of Membracidae with strong support (BS = 100; PP = 1) received both in the ML tree and BI tree. Within Membracoidea, as in other recent phylogenetic studies, some early divergences within Cicadellidae, pertaining to relationships among subfamilies and tribes, are not well resolved. Specifically, the relationships among tribes in Deltocephalinae, especially Opsiini, Paralimnini, Deltocephalini, Chiasmini, and Drabescini, remain unstable. Relationships among Typhlocybinae, Cicadellinae, Evacanthinae, Ledrinae, Idiocerinae, Coelidiinae, Iassinae, Megophthalminae, Smiliinae, Aetalioninae and Centrotinae are congruent in both the ML tree and the BI tree (Figure 4 and Figure 5). Treehoppers (Membracidae and Aetalionidae) are a monophyletic group sister to Megophthalminae and derived from a paraphyletic lineage of leafhoppers (Cicadellidae).
Figure 4

ML tree inferred from IQ-TREE analyses. Numbers on nodes are the bootstrap support values (BS).

Figure 5

BI tree inferred from MrBayes analyses. Numbers on nodes are the Bayesian posterior probabilities (PP).

4. Discussion

In this study, the sequenced-mitogenome genes of these Centrotinae species are found to be highly conserved, similar to other Membracidae. Phylogenetic analyses indicate that Membracoidea was divided into two major clades is consistent with several previous studies [9,38,40,41]. The relationships among tribes in Deltocephalinae, especially Opsiini, Paralimnini, Deltocephalini, Chiasmini, and Drabescini, remain unstable. Previous analyses have also yielded inconsistent results for this group [70,71]. The Membracidae subfamilies Smiliinae and Centrotinae are both recovered as monophyletic groups, which is generally consistent with previous studies [8,9,10,40,65,66], but Membracidae itself is paraphyletic with respect to Aetalionidae. To better understand the relationships within the treehopper lineage, data for representatives of additional subfamilies are needed because only two subfamilies are represented in the current dataset. A relationship Smiliinae + (Aetalionidae + Centrotinae) within treehoppers in both phylogenetic topologies has been recovered, which is congruent with some previous research [2,40], but, given the lack of data for other New World subfamilies (i.e., Centronodinae, Darninae, Heteronotinae, Membracinae and Nicomiinae), our results should be interpreted with caution. Within Centrotinae, the largest membracid subfamily, our results (Figure 4 and Figure 5) support the monophyly of Centrotini and Leptobelini, but the monophyly of Tricentrini is rejected according to the classification system of Membracoidea from China proposed by Yuan and Chou [23]. However, the tribes Tricentrini, Gargarini, and Antialcidini share many morphological characters, for example, they possess posterior process on pronotum and no dentatus on either side of the mesonotum; three apical cells on hindwings; and the scutellum is covered by a posterior process, and only two sides are exposed [23]. Moreover, according to the revised classification proposed by Wallace et al. [3], Tricentrini Ahmad et Yasmeen, 1974 (new Synonym), Gargarini Distant, 1907 sensu stricto, and Antialcidini Yuan et Zhang, 2002 (new Synonym nova) are all included in Gargarini sensu lato. In consideration of these, our analyses recover Gargarini (sensu Wallace et al.) as a monophyletic group. Relationships among the included tribes within Centrotinae can be inferred as (Hypsaucheniini + ((Centrotini + Leptobelini) + (Leptocentrini + Gargarini))).

5. Conclusions

The complete mitogenomes of A. lineatus, A. yunnanensis, G. genistae and T. longivalvulatus are newly sequenced in this study, and the structural characteristics and nucleotide compositions are found to be similar to those of other Membracoidea species as well as to the hypothetical ancestral insect mitogenome. The BI and ML phylogenetic analyses of concatenated alignments of 13 mitochondrial PCGs among the major lineages yield well-resolved topologies, with most branches receiving moderate to strong support. Membracoidea, membracid subfamilies Smiliinae, Centrotinae, and tribes within Centrotinae, Centrotini and Leptobelini are recovered as well-supported monophyletic groups, while Tricentrini, in the traditional sense, is paraphyletic. The tribe Gargarini (sensu Wallace et al.) is supported and recovered as a monophyletic group. At a tribe level, the relationship [Hypsaucheniini + ((Centrotini + Leptobelini) + (Leptocentrini + Gargarini))] is recovered based on ML and BI analyses. Taken together, mitogenomic data are helpful in reconstructing the phylogenetic relationships of Membracoidea, at least at the subfamily and tribe levels, consistent with previous analyses of other kinds of data. However, knowledge of phylogenetic relationships within this group continues to be hindered by the extremely limited number of taxa that have, so far, been included in molecular datasets, including those based on complete mitogenomes. Based on our results, further sequencing of mitogenomes is expected to yield increasingly robust estimates of relationships among major lineages of Membracoidea.
  49 in total

1.  A preliminary mitochondrial genome phylogeny of Orthoptera (Insecta) and approaches to maximizing phylogenetic signal found within mitochondrial genome data.

Authors:  J Daniel Fenn; Hojun Song; Stephen L Cameron; Michael F Whiting
Journal:  Mol Phylogenet Evol       Date:  2008-07-15       Impact factor: 4.286

2.  Structural features and phylogenetic implications of four new mitogenomes of Centrotinae (Hemiptera: Membracidae).

Authors:  Kai Hu; Feng Yuan; Christopher H Dietrich; Xiang-Qun Yuan
Journal:  Int J Biol Macromol       Date:  2019-08-08       Impact factor: 6.953

3.  Complete mitochondrial genome of Taharana fasciana (Insecta, Hemiptera: Cicadellidae) and comparison with other Cicadellidae insects.

Authors:  Jiajia Wang; Hu Li; Renhuai Dai
Journal:  Genetica       Date:  2017-09-14       Impact factor: 1.082

4.  The CGView Server: a comparative genomics tool for circular genomes.

Authors:  Jason R Grant; Paul Stothard
Journal:  Nucleic Acids Res       Date:  2008-04-14       Impact factor: 16.971

5.  IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.

Authors:  Lam-Tung Nguyen; Heiko A Schmidt; Arndt von Haeseler; Bui Quang Minh
Journal:  Mol Biol Evol       Date:  2014-11-03       Impact factor: 16.240

6.  The complete mitochondrial genome of Empoascanara sipra (Hemiptera:Cicadellidae:Typhlocybinae) with phylogenetic consideration.

Authors:  Chao Tan; Xiaoxiao Chen; Can Li; Yuehua Song
Journal:  Mitochondrial DNA B Resour       Date:  2019-12-13       Impact factor: 0.658

7.  The complete mitochondrial genome of the leafhopper Idioscopus clypealis (Hemiptera: Cicadellidae: Idiocerinae).

Authors:  Dai Renhuai; Wang Jiajia; Yang Maofa
Journal:  Mitochondrial DNA B Resour       Date:  2017-12-21       Impact factor: 0.658

8.  Complete mitochondrial genome of Idioscopus nitidulus (Hemiptera: Cicadellidae).

Authors:  Jaipal S Choudhary; Naiyar Naaz; Bikash Das; Bhagwati P Bhatt; Chandra S Prabhakar
Journal:  Mitochondrial DNA B Resour       Date:  2018-02-10       Impact factor: 0.658

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