| Literature DB >> 30581332 |
Shahriar Tarighi1, Mahdi Najafi2, Arash Hossein-Nezhad3, Hamid Ghaedi4, Reza Meshkani5, Nariman Moradi6, Reza Fadaei5, Faranak Kazerouni1, Mehrnoosh Shanaki1.
Abstract
BACKGROUND: Coronary Artery Disease (CAD) is one of the most widespread non-communicable diseases. Vitamin Dbinding protein (VDBP) and its genetic poly morphisms have been highlighted as the susceptible components for CAD. The aim of the present study was to examine the association of VDBP single nucleotide poly morphisms (SNPs) - rs7041 and rs4588 - with CAD susceptibility among the Iranian population.Entities:
Keywords: 25(OH)D; coronary artery disease; polymorphism; vitamin D-binding protein
Year: 2017 PMID: 30581332 PMCID: PMC6294082 DOI: 10.1515/jomb-2017-0015
Source DB: PubMed Journal: J Med Biochem ISSN: 1452-8266 Impact factor: 3.402
Primer sequences of rs7041 and rs4588 polymorphisms.
| SNP primer sequences | |
| Forward | 5’AAATAATGAGCAAATGAAAGAAGAC 3’ |
| Reverse | 5’CAATAACAGCAAAGAAATGAGTAGA 3’ |
Anthropometric data and clinical characteristics of CAD patients and Control group.
| Characteristics | CAD | Healthy controls | Mann-Whitney U |
|---|---|---|---|
| Median (IQR) | Median (IQR) | p-value | |
| Age (yr) | 57 (53–63) | 55 (49–64) | 0.058 |
| BMI (kg/m2) | 26 (24–29) | 26 (24–29) | 0.818 |
| WC (cm) | 98 (92–105) | 94 (88–97) | 0.001 |
| FBG (mmol/L) | 5.16 (4.77–5.49) | 5.05 (4.66–5.49) | 0.416 |
| LDL-C (mmol/L) | 2.56 (2.07–3.10) | 2.25 (1.83–2.84) | 0.014 |
| HDL-C (mmol/L) | 0.9 (0.75–1.01) | 1.03 (0.85–1.21) | <0.001 |
| TC (mmol/L) | 4.14 (3.60–4.97) | 3.60 (3.03–4.35) | <0.001 |
| TG (mmol/L) | 1.24 (0.94–1.75) | 1.51 (1.11–2.22) | 0.001 |
| Ca (mmol/L) | 2.25 (2.25–2.50) | 2.25 (2.25–2.25) | 0.842 |
| Phos (mmol/L) | 0.95 (0.81–1.13) | 1.01 (0.84–1.13) | 0.278 |
| 25(OH)D (nmol/L) | 25.38 (15.63–38.56) | 29.66 (20.65–51.88) | 0.018 |
| SBP (mmHg) | 120 (120–130) | 120 (110–120) | 0.048 |
| DBP (mmHg) | 80 (70–80) | 72 (70–80) | 0.041 |
Continuous variables are presented as median (interquartile range: P25–P75).
Differences between cases and controls were obtained based on the Mann-Whitney U test.
CAD, Coronary Artery Disease; BMI, Body Mass Index; WC, Waist Circumference; FBG, Fasting Blood Glucose; HbA1c, Glycated Hemoglobin; Ca, Calcium; Phos, Phosphorus; LDL-C, Low Density Lipoprotein Cholesterol; HDL-C, High Density Lipoprotein Cholesterol; TG, Triglyceride; TC, Total Cholesterol; T2DM, Type 2 Diabetes Mellitus; SBP, Systolic Blood Pressure; DBP, Diastolic Blood Pressure
Allelic and genotypic frequencies of rs7041 and rs4588 polymorphisms in CAD patients and control group.
| Alleles/ Genotypes | CAD | Control | |||||
|---|---|---|---|---|---|---|---|
| Models | N (%) | N (%) | OR (95% CI) | p-value | AIC | ||
| rs4588 | C | allelic | 187 (65.4%) | 214 (73.8%) | Referent | 0.028 | |
| A | 99 (34.6%) | 70 (26.2%) | 1.491 (1.043–2.132) | ||||
| CC | Co-dominant | 50 (35.0%) | 80 (55.2%) | Referent | 0.00032 | 389 | |
| CA | 87 (60.8%) | 54 (37.2%) | 2.578 (1.579–4.208) | ||||
| AA | 6 (4.2%) | 11 (7.6%) | 0.873 (0.535–1.425) | ||||
| CA+AA | Dominant | 93 (65%) | 65 (44.8%) | Referent | 0.001 | 391.3 | |
| CC | 50 (35%) | 80 (55.2%) | 0.437 (0.272–0.702) | ||||
| CC+CA | Recessive | 137 (95.8%) | 134 (92.4%) | Referent | 0.222 | 401.7 | |
| AA | 6 (4.2%) | 11 (7.6%) | 0.534 (0.192–1.484) | ||||
| CC+AA | Over-dominant | 56 (39.2%) | 91 (62.8%) | Referent | <0.001 | 387 | |
| CA | 87 (60.8%) | 54 (37.2%) | 2.617 (1.626–4.219) | ||||
| HWE | 0.655 | ||||||
| rs7041 | T | allelic | 150 (52.4%) | 137 (47.2%) | 0.812 (0.585–1.126) | 0.211 | |
| G | 136 (47.6%) | 153 (52.8%) | Referent | ||||
| TT | Co-dominant | 32 (22.4%) | 33 (22.8%) | 1.590 (0.891–2.837) | 0.070 | 399.9 | |
| TG | 86 (60.1%) | 71 (49.0%) | 1.986 (1.113–3.544) | ||||
| GG | 25 (17.5%) | 41 (28.3%) | Referent | ||||
| TT+TG | Dominant | 118 (82.5%) | 104 (71.7%) | Referent | 0.029 | 398.5 | |
| GG | 25 (17.5%) | 41 (28.3%) | 0.537 (0.306–0.944) | ||||
| TG+GG | Recessive | 111 (77.6) | 112 (77.2%) | Referent | 0.938 | 403.2 | |
| TT | 32 (22.4) | 33 (22.8%) | 0.978 (0.563–1.701) | ||||
| TT+GG | Over-dominant | 57 (39.9%) | 74 (51%) | Referent | 0.057 | 399.6 | |
| TG | 86 (60.1%) | 71 (49%) | 1.572 (0.986–2.506) | ||||
| HWE | 0.831 | ||||||
CAD, Coronary Artery Disease; OR, Odds Ratio; CI, Confidence Interval, AIC, Akaike Information Criterion
Chi-square test; HWE, Hardy-Weinberg Equilibrium test p-value
Diplotype frequencies of rs4588 and rs7041 polymorphisms in CAD patients and control group.
| rs4588/rs7041 diplotype | CAD | Control | p-value | OR (95% CI) |
|---|---|---|---|---|
| CC/GG | 18 (11.3%) | 40 (27.6%) | 1 | Referent |
| AA/TT | 3 (1.9%) | 11 (7.6%) | 0.478 | 0.606 (0.151–2.439) |
| CA/GG | 7 (4.4%) | 1 (0.7%) | 0.002 | 15.556 (1.780–135.956) |
| CA/TG | 57 (35.8%) | 40 (27.6%) | 0.001 | 3.167 (1.592–6.299) |
| CA/TT | 23 (14.5%) | 13 (9%) | 0.002 | 3.932 (1.633–9.466) |
| CC/TG | 26 (16.4%) | 31 (21.4%) | 0.108 | 1.864 (0.870–3.995) |
| CC/TT | 6 (3.8%) | 9 (6.2%) | 0.510 | 1.481 (0.458–4.789) |
CAD, Coronary Artery Disease; OR, Odds Ratio; CI, Confidence Interval
Association of demographic data with genotypic frequencies for rs4588 and rs7041 polymorphisms.
| rs4588 | Kruskal- | rs7041 | Kruskal- | |||||
|---|---|---|---|---|---|---|---|---|
| Characte - | CC | CA | AA | Wallis | TT | TG | GG | Wallis |
| ristics | Median | Median | Median | Median | Median | Median | ||
| p-value | p-value | |||||||
| (IQR) | (IQR) | (IQR) | (IQR) | (IQR) | (IQR) | |||
| 54 | 57 | 58 | 58 | 56 | 57 | |||
| Age (yr) | 0.046 | 0.235 | ||||||
| (50–59) | (52–64) | (52–66) | (52–65) | (51–63) | (51–60) | |||
| 26 | 26 | 26 | 26 | 26 | 27 | |||
| BMI (kg/m2) | 0.482 | 0.350 | ||||||
| (24–29) | (24–29) | (24–26) | (24–28) | (24–29) | (25–29) | |||
| 97 | 96 | 92 | 95 | 96 | 100 | |||
| WC (cm) | 0.209 | 0.375 | ||||||
| (91–105) | (91–102) | (88–96) | (90–99) | (90–103) | (93–105) | |||
| FBG | 5.10 | 5.10 | 4.88 | 5.05 | 5.10 | 5.16 | ||
| 0.706 | 0.713 | |||||||
| (mmol/L) | (4.71–5.49) | (4.665.49) | (85–97) | (4.77–5.55) | (4.66–5.43) | (4.71–5.55) | ||
| LDL-C | 2.35 | 2.46 | 2.40 | 2.66 | 2.30 | 2.35 | ||
| 0.662 | 0.093 | |||||||
| (mmol/L) | (1.96–2.87) | (1.86–3.21) | (1.89–3.15) | (2.14–3.28) | (1.83–2.95) | (2.02–2.79) | ||
| HDL-C | 0.98 | 0.90 | 1.06 | 0.93 | 0.95 | 0.93 | ||
| 0.082 | 0.820 | |||||||
| (mmol/L) | (0.80–1.16) | (0.77–1.03) | (0.90–1.13) | (0.80–1.11) | (0.77–1.13) | (0.75–1.06) | ||
| TC | 3.85 | 4.01 | 4.09 | 4.14 | 3.78 | 4.09 | ||
| 0.621 | 0.075 | |||||||
| (mmol/L) | (3.28–4.61) | (3.18–4.92) | (3.18–4.92) | (3.44–4.97) | (3.13–4.79) | (3.49–4.66) | ||
| TG | 1.33 | 1.41 | 1.29 | 1.41 | 1.38 | 1.29 | ||
| 0.624 | 0.920 | |||||||
| (mmol/L) | (1.02–1.92) | (0.97–2.12) | (0.83–2.09) | (0.96–2.14) | (1–1.94) | (0.99–2.02) | ||
| Ca | 2.25 | 2.25 | 2.25 | 2.25 | 2.25 | 2.25 | ||
| 0.205 | 0.154 | |||||||
| (mmol/L) | (2.25–2.50) | (2.25–2.25) | (2.25–2.25) | (2.25–2.50) | (2.25–2.50) | (2.25–2.25) | ||
| Phos | 0.95 | 0.96 | 1.01 | 0.95 | 0.98 | 0.93 | ||
| 0.381 | 0.253 | |||||||
| (mmol/L) | (0.83–1.11) | (0.84–1.13) | (0.85–1.27) | (0.85–1.09) | (0.82–1.14) | (0.87–1.11) | ||
| 25(OH)D | 26.44 | 27.29 | 22.94 | 24.53 | 26.62 | 32.92 | ||
| 0.816 | 0.233 | |||||||
| (nmol/L) | (19.56–42.67) | (16.28–41.11) | (21.31–58.52) | (16.43–36.89) | (17.79–39.36) | (17.59–55.53) | ||
| SBP | 26.44 | 120 (110– | 120 (115– | 120 (110– | 120 | |||
| 0.997 | 120 (110–120) | 0.386 | ||||||
| (mmHg) | (19.56–42.67) | 130) | 121.5) | 130) | (110–130) | |||
| DBP (mmHg) | 73 (70–80) | 78 (70–80) | 80 (75–80) | 0.491 | 80 (70–80) | 80 (70–80) | (6070 –73) | 0.070 |
Continuous variables are presented as median (interquartile range: P25-P75).
Differences between cases and controls are obtained based on the Mann-Whitney U test.
CAD, Coronary Artery Disease; BMI, Body Mass Index; WC, Waist Circumference
FBG, Fasting Blood Glucose; HbA1c, Glycated Hemoglobin; Ca, Calcium; Phos, Phosphorus;
LDL-C, Low Density Lipoprotein Cholesterol; HDL-C, High Density Lipoprotein Cholesterol;
TG, Triglyceride; TC, Total Cholesterol; T2DM, Type 2 Diabetes Mellitus; SBP, Systolic Blood Pressure;
DBP, Diastolic Blood Pressure