Literature DB >> 30581045

A Metastable Contact and Structural Disorder in the Estrogen Receptor Transactivation Domain.

Yi Peng1, Shufen Cao2, Janna Kiselar1, Xiangzhu Xiao2, Zhanwen Du1, An Hsieh1, Soobin Ko1, Yinghua Chen2, Prashansa Agrawal3, Wenwei Zheng4, Wuxian Shi1, Wei Jiang5, Lin Yang6, Mark R Chance7, Witold K Surewicz2, Matthias Buck8, Sichun Yang9.   

Abstract

The N-terminal transactivation domain (NTD) of estrogen receptor alpha, a well-known member of the family of intrinsically disordered proteins, mediates the receptor's transactivation function. However, an accurate molecular dissection of NTD's structure-function relationships remains elusive. Here, we show that the NTD adopts a mostly disordered, unexpectedly compact conformation that undergoes structural expansion on chemical denaturation. By combining small-angle X-ray scattering, hydroxyl radical protein footprinting, and computational modeling, we derive the ensemble-structures of the NTD and determine its ensemble-contact map revealing metastable long-range contacts, e.g., between residues I33 and S118. We show that mutation at S118, a known phosphorylation site, promotes conformational changes and increases coactivator binding. We further demonstrate via fluorine-19 (19F) nuclear magnetic resonance that mutations near I33 alter 19F chemical shifts at S118, confirming the proposed I33-S118 contact in the ensemble of structural disorder. These findings extend our understanding of how specific contact metastability mediates critical functions of disordered proteins.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  SAXS; contact metastability; intrinsically disordered protein; multi-technique data integration; protein footprinting; structural disorder

Mesh:

Substances:

Year:  2018        PMID: 30581045      PMCID: PMC6365180          DOI: 10.1016/j.str.2018.10.026

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  86 in total

Review 1.  Protein identification and analysis tools in the ExPASy server.

Authors:  M R Wilkins; E Gasteiger; A Bairoch; J C Sanchez; K L Williams; R D Appel; D F Hochstrasser
Journal:  Methods Mol Biol       Date:  1999

2.  Regulation of estrogen receptor α N-terminus conformation and function by peptidyl prolyl isomerase Pin1.

Authors:  Prashant Rajbhandari; Greg Finn; Natalia M Solodin; Kiran K Singarapu; Sarata C Sahu; John L Markley; Kelley J Kadunc; Stephanie J Ellison-Zelski; Anastasia Kariagina; Sandra Z Haslam; Kun Ping Lu; Elaine T Alarid
Journal:  Mol Cell Biol       Date:  2011-11-07       Impact factor: 4.272

3.  Structural interpretation of paramagnetic relaxation enhancement-derived distances for disordered protein states.

Authors:  Debabani Ganguly; Jianhan Chen
Journal:  J Mol Biol       Date:  2009-05-15       Impact factor: 5.469

Review 4.  Radiolytic protein footprinting with mass spectrometry to probe the structure of macromolecular complexes.

Authors:  Keiji Takamoto; Mark R Chance
Journal:  Annu Rev Biophys Biomol Struct       Date:  2006

5.  Replica exchange with guided annealing for accelerated sampling of disordered protein conformations.

Authors:  Weihong Zhang; Jianhan Chen
Journal:  J Comput Chem       Date:  2014-07-04       Impact factor: 3.376

6.  Generating NMR chemical shift assignments of intrinsically disordered proteins using carbon-detected NMR methods.

Authors:  Debashish Sahu; Monique Bastidas; Scott A Showalter
Journal:  Anal Biochem       Date:  2013-12-10       Impact factor: 3.365

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 8.  Amide hydrogen exchange in a highly denatured state. Hen egg-white lysozyme in urea.

Authors:  M Buck; S E Radford; C M Dobson
Journal:  J Mol Biol       Date:  1994-04-01       Impact factor: 5.469

9.  Activation of the estrogen receptor through phosphorylation by mitogen-activated protein kinase.

Authors:  S Kato; H Endoh; Y Masuhiro; T Kitamoto; S Uchiyama; H Sasaki; S Masushige; Y Gotoh; E Nishida; H Kawashima; D Metzger; P Chambon
Journal:  Science       Date:  1995-12-01       Impact factor: 47.728

10.  Multidomain architecture of estrogen receptor reveals interfacial cross-talk between its DNA-binding and ligand-binding domains.

Authors:  Wei Huang; Yi Peng; Janna Kiselar; Xuan Zhao; Aljawharah Albaqami; Daniel Mendez; Yinghua Chen; Srinivas Chakravarthy; Sayan Gupta; Corie Ralston; Hung-Ying Kao; Mark R Chance; Sichun Yang
Journal:  Nat Commun       Date:  2018-08-30       Impact factor: 14.919

View more
  15 in total

Review 1.  The metastable states of proteins.

Authors:  Debasish Kumar Ghosh; Akash Ranjan
Journal:  Protein Sci       Date:  2020-04-11       Impact factor: 6.725

Review 2.  Small, but powerful and attractive: 19F in biomolecular NMR.

Authors:  Angela M Gronenborn
Journal:  Structure       Date:  2021-12-13       Impact factor: 5.006

3.  Gaussian accelerated molecular dynamics (GaMD): principles and applications.

Authors:  Jinan Wang; Pablo R Arantes; Apurba Bhattarai; Rohaine V Hsu; Shristi Pawnikar; Yu-Ming M Huang; Giulia Palermo; Yinglong Miao
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2021-03-01

4.  Hydropathy Patterning Complements Charge Patterning to Describe Conformational Preferences of Disordered Proteins.

Authors:  Wenwei Zheng; Gregory Dignon; Matthew Brown; Young C Kim; Jeetain Mittal
Journal:  J Phys Chem Lett       Date:  2020-04-17       Impact factor: 6.475

Review 5.  Protein Footprinting: Auxiliary Engine to Power the Structural Biology Revolution.

Authors:  Mark R Chance; Erik R Farquhar; Sichun Yang; David T Lodowski; Janna Kiselar
Journal:  J Mol Biol       Date:  2020-02-21       Impact factor: 5.469

Review 6.  Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Protein Sci       Date:  2021-03-04       Impact factor: 6.725

Review 7.  Fusion-associated carcinomas of the breast: Diagnostic, prognostic, and therapeutic significance.

Authors:  Suet Kee Loo; Megan E Yates; Sichun Yang; Steffi Oesterreich; Adrian V Lee; Xiao-Song Wang
Journal:  Genes Chromosomes Cancer       Date:  2022-02-17       Impact factor: 5.006

8.  Structural basis for the hyperthermostability of an archaeal enzyme induced by succinimide formation.

Authors:  Aparna Vilas Dongre; Sudip Das; Asutosh Bellur; Sanjeev Kumar; Anusha Chandrashekarmath; Tarak Karmakar; Padmanabhan Balaram; Sundaram Balasubramanian; Hemalatha Balaram
Journal:  Biophys J       Date:  2021-07-22       Impact factor: 3.699

9.  An intrinsically disordered proteins community for ELIXIR.

Authors:  Norman E Davey; M Madan Babu; Martin Blackledge; Alan Bridge; Salvador Capella-Gutierrez; Zsuzsanna Dosztanyi; Rachel Drysdale; Richard J Edwards; Arne Elofsson; Isabella C Felli; Toby J Gibson; Aleksandras Gutmanas; John M Hancock; Jen Harrow; Desmond Higgins; Cy M Jeffries; Philippe Le Mercier; Balint Mészáros; Marco Necci; Cedric Notredame; Sandra Orchard; Christos A Ouzounis; Rita Pancsa; Elena Papaleo; Roberta Pierattelli; Damiano Piovesan; Vasilis J Promponas; Patrick Ruch; Gabriella Rustici; Pedro Romero; Sirarat Sarntivijai; Gary Saunders; Benjamin Schuler; Malvika Sharan; Denis C Shields; Joel L Sussman; Jonathan A Tedds; Peter Tompa; Michael Turewicz; Jiri Vondrasek; Wim F Vranken; Bonnie Ann Wallace; Kanin Wichapong; Silvio C E Tosatto
Journal:  F1000Res       Date:  2019-10-15

10.  Quantitative comparison between sub-millisecond time resolution single-molecule FRET measurements and 10-second molecular simulations of a biosensor protein.

Authors:  Dylan Girodat; Avik K Pati; Daniel S Terry; Scott C Blanchard; Karissa Y Sanbonmatsu
Journal:  PLoS Comput Biol       Date:  2020-11-05       Impact factor: 4.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.