Literature DB >> 30575525

Estimation of Vector Autoregressive Parameters and Granger Causality From Noisy Multichannel Data.

Prashant Rangarajan, Rajesh P N Rao.   

Abstract

OBJECTIVE: The objective of this paper is to estimate the parameters of a multivariate autoregressive process from noisy multichannel data.
METHODS: Using a multivariate generalization of the Cadzow method, we propose a new method for estimating autoregressive parameters from noisy data: the nonlinear Cadzow method.
RESULTS: We show that our method outperforms existing multivariate methods such as higher order Yule-Walker method and Kalman EM method on simulated data. We apply our method to estimation of Granger causality from noisy data and again obtain superior results compared to previous methods. Finally, when applied to experimental local field potential data from monkey somatosensory and motor cortical areas, our method produces results consistent with cortical physiology.
CONCLUSION: The proposed nonlinear Cadzow method outperforms existing methods in obtaining denoised estimates of multivariate autoregressive parameters. SIGNIFICANCE: Since multichannel recordings have become commonplace in biomedical applications ranging from discovering functional connectivity in the brain to speech data analysis and these recordings are inevitably contaminated by measurement noise, we believe our method has the potential for significant impact.

Entities:  

Mesh:

Year:  2018        PMID: 30575525      PMCID: PMC6859843          DOI: 10.1109/TBME.2018.2885812

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  27 in total

1.  Short-window spectral analysis of cortical event-related potentials by adaptive multivariate autoregressive modeling: data preprocessing, model validation, and variability assessment.

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2.  Identification of directed influence: Granger causality, Kullback-Leibler divergence, and complexity.

Authors:  Abd-Krim Seghouane; Shun-Ichi Amari
Journal:  Neural Comput       Date:  2012-03-19       Impact factor: 2.026

3.  Distinguishing causal interactions in neural populations.

Authors:  Anil K Seth; Gerald M Edelman
Journal:  Neural Comput       Date:  2007-04       Impact factor: 2.026

4.  The MVGC multivariate Granger causality toolbox: a new approach to Granger-causal inference.

Authors:  Lionel Barnett; Anil K Seth
Journal:  J Neurosci Methods       Date:  2013-11-05       Impact factor: 2.390

5.  Analyzing information flow in brain networks with nonparametric Granger causality.

Authors:  Mukeshwar Dhamala; Govindan Rangarajan; Mingzhou Ding
Journal:  Neuroimage       Date:  2008-02-25       Impact factor: 6.556

6.  Granger causality for state-space models.

Authors:  Lionel Barnett; Anil K Seth
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2015-04-23

7.  Effect of measurement noise on Granger causality.

Authors:  Hariharan Nalatore; N Sasikumar; Govindan Rangarajan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-12-18

8.  A copula approach to assessing Granger causality.

Authors:  Meng Hu; Hualou Liang
Journal:  Neuroimage       Date:  2014-06-17       Impact factor: 6.556

9.  Denoising neural data with state-space smoothing: method and application.

Authors:  Hariharan Nalatore; Mingzhou Ding; Govindan Rangarajan
Journal:  J Neurosci Methods       Date:  2009-01-22       Impact factor: 2.390

10.  A novel extended Granger Causal Model approach demonstrates brain hemispheric differences during face recognition learning.

Authors:  Tian Ge; Keith M Kendrick; Jianfeng Feng
Journal:  PLoS Comput Biol       Date:  2009-11-20       Impact factor: 4.475

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