Literature DB >> 24945669

A copula approach to assessing Granger causality.

Meng Hu1, Hualou Liang2.   

Abstract

In neuroscience, as in many other fields of science and engineering, it is crucial to assess the causal interactions among multivariate time series. Granger causality has been increasingly used to identify causal influence between time series based on multivariate autoregressive models. Such an approach is based on linear regression framework with implicit Gaussian assumption of model noise residuals having constant variance. As a consequence, this measure cannot detect the cause-effect relationship in high-order moments and nonlinear causality. Here, we propose an effective model-free, copula-based Granger causality measure that can be used to reveal nonlinear and high-order moment causality. We first formulate Granger causality as the log-likelihood ratio in terms of conditional distribution, and then derive an efficient estimation procedure using conditional copula. We use resampling techniques to build a baseline null-hypothesis distribution from which statistical significance can be derived. We perform a series of simulations to investigate the performance of our copula-based Granger causality, and compare its performance against other state-of-the-art techniques. Our method is finally applied to neural field potential time series recorded from visual cortex of a monkey while performing a visual illusion task.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Copula; Granger causality; Neural data analysis

Mesh:

Year:  2014        PMID: 24945669     DOI: 10.1016/j.neuroimage.2014.06.013

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  13 in total

1.  Temporal Information of Directed Causal Connectivity in Multi-Trial ERP Data using Partial Granger Causality.

Authors:  Vahab Youssofzadeh; Girijesh Prasad; Muhammad Naeem; KongFatt Wong-Lin
Journal:  Neuroinformatics       Date:  2016-01

2.  Copula regression analysis of simultaneously recorded frontal eye field and inferotemporal spiking activity during object-based working memory.

Authors:  Meng Hu; Kelsey L Clark; Xiajing Gong; Behrad Noudoost; Mingyao Li; Tirin Moore; Hualou Liang
Journal:  J Neurosci       Date:  2015-06-10       Impact factor: 6.167

3.  Estimation of Vector Autoregressive Parameters and Granger Causality From Noisy Multichannel Data.

Authors:  Prashant Rangarajan; Rajesh P N Rao
Journal:  IEEE Trans Biomed Eng       Date:  2018-12-18       Impact factor: 4.538

4.  Data on copula modeling of mixed discrete and continuous neural time series.

Authors:  Meng Hu; Mingyao Li; Wu Li; Hualou Liang
Journal:  Data Brief       Date:  2016-04-13

5.  Structure-Function Network Mapping and Its Assessment via Persistent Homology.

Authors:  Hualou Liang; Hongbin Wang
Journal:  PLoS Comput Biol       Date:  2017-01-03       Impact factor: 4.475

6.  A statistical framework for neuroimaging data analysis based on mutual information estimated via a gaussian copula.

Authors:  Robin A A Ince; Bruno L Giordano; Christoph Kayser; Guillaume A Rousselet; Joachim Gross; Philippe G Schyns
Journal:  Hum Brain Mapp       Date:  2016-11-17       Impact factor: 5.038

7.  Brain effective connectivity during motor-imagery and execution following stroke and rehabilitation.

Authors:  Sahil Bajaj; Andrew J Butler; Daniel Drake; Mukesh Dhamala
Journal:  Neuroimage Clin       Date:  2015-06-28       Impact factor: 4.881

8.  Inference of biological networks using Bi-directional Random Forest Granger causality.

Authors:  Mohammad Shaheryar Furqan; Mohammad Yakoob Siyal
Journal:  Springerplus       Date:  2016-04-26

9.  Causal Inference Based on the Analysis of Events of Relations for Non-stationary Variables.

Authors:  Yu Yin; Dezhong Yao
Journal:  Sci Rep       Date:  2016-07-08       Impact factor: 4.379

10.  Top-Down Control of Visual Alpha Oscillations: Sources of Control Signals and Their Mechanisms of Action.

Authors:  Chao Wang; Rajasimhan Rajagovindan; Sahng-Min Han; Mingzhou Ding
Journal:  Front Hum Neurosci       Date:  2016-01-20       Impact factor: 3.169

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