Literature DB >> 18394927

Analyzing information flow in brain networks with nonparametric Granger causality.

Mukeshwar Dhamala1, Govindan Rangarajan, Mingzhou Ding.   

Abstract

Multielectrode neurophysiological recording and high-resolution neuroimaging generate multivariate data that are the basis for understanding the patterns of neural interactions. How to extract directions of information flow in brain networks from these data remains a key challenge. Research over the last few years has identified Granger causality as a statistically principled technique to furnish this capability. The estimation of Granger causality currently requires autoregressive modeling of neural data. Here, we propose a nonparametric approach based on widely used Fourier and wavelet transforms to estimate both pairwise and conditional measures of Granger causality, eliminating the need of explicit autoregressive data modeling. We demonstrate the effectiveness of this approach by applying it to synthetic data generated by network models with known connectivity and to local field potentials recorded from monkeys performing a sensorimotor task.

Mesh:

Year:  2008        PMID: 18394927      PMCID: PMC2685256          DOI: 10.1016/j.neuroimage.2008.02.020

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  23 in total

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2.  Investigating directed cortical interactions in time-resolved fMRI data using vector autoregressive modeling and Granger causality mapping.

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Journal:  J Neurosci Methods       Date:  2003-03-30       Impact factor: 2.390

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Journal:  Neuroimage       Date:  2006-01-04       Impact factor: 6.556

5.  Frequency decomposition of conditional Granger causality and application to multivariate neural field potential data.

Authors:  Yonghong Chen; Steven L Bressler; Mingzhou Ding
Journal:  J Neurosci Methods       Date:  2005-08-15       Impact factor: 2.390

Review 6.  Distributed hierarchical processing in the primate cerebral cortex.

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7.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

8.  Multivariate autoregressive modeling of fMRI time series.

Authors:  L Harrison; W D Penny; K Friston
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

9.  Episodic multiregional cortical coherence at multiple frequencies during visual task performance.

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10.  Determination of information flow direction among brain structures by a modified directed transfer function (dDTF) method.

Authors:  Anna Korzeniewska; Małgorzata Mańczak; Maciej Kamiński; Katarzyna J Blinowska; Stefan Kasicki
Journal:  J Neurosci Methods       Date:  2003-05-30       Impact factor: 2.390

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  101 in total

1.  Behavior-related pauses in simple-spike activity of mouse Purkinje cells are linked to spike rate modulation.

Authors:  Ying Cao; Selva K Maran; Mukesh Dhamala; Dieter Jaeger; Detlef H Heck
Journal:  J Neurosci       Date:  2012-06-20       Impact factor: 6.167

2.  Temporal Information of Directed Causal Connectivity in Multi-Trial ERP Data using Partial Granger Causality.

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Journal:  Neuroinformatics       Date:  2016-01

3.  Theta-rhythmic drive between medial septum and hippocampus in slow-wave sleep and microarousal: a Granger causality analysis.

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Journal:  J Neurophysiol       Date:  2015-09-09       Impact factor: 2.714

4.  Exploring resting-state functional connectivity with total interdependence.

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Journal:  Neuroimage       Date:  2012-01-25       Impact factor: 6.556

5.  Analyzing multiple spike trains with nonparametric Granger causality.

Authors:  Aatira G Nedungadi; Govindan Rangarajan; Neeraj Jain; Mingzhou Ding
Journal:  J Comput Neurosci       Date:  2009-01-10       Impact factor: 1.621

6.  Multivariate Granger causality: an estimation framework based on factorization of the spectral density matrix.

Authors:  Xiaotong Wen; Govindan Rangarajan; Mingzhou Ding
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2013-07-15       Impact factor: 4.226

7.  Temporal-order judgment of audiovisual events involves network activity between parietal and prefrontal cortices.

Authors:  Bhim Mani Adhikari; Eli S Goshorn; Bidhan Lamichhane; Mukesh Dhamala
Journal:  Brain Connect       Date:  2013-09-26

8.  Analyzing brain networks with PCA and conditional Granger causality.

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Journal:  Hum Brain Mapp       Date:  2009-07       Impact factor: 5.038

9.  Oscillatory activity in neocortical networks during tactile discrimination near the limit of spatial acuity.

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Journal:  Neuroimage       Date:  2014-01-13       Impact factor: 6.556

10.  Increases in functional connectivity between prefrontal cortex and striatum during category learning.

Authors:  Evan G Antzoulatos; Earl K Miller
Journal:  Neuron       Date:  2014-06-12       Impact factor: 17.173

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