| Literature DB >> 30548828 |
Yuxin Qi1,2, Jiaqi Wang1,2, Mingqi Sun2, Chao Ma2, Tianbo Jin3, Yuan Liu1,2, Yuju Cao4, Jianzhong Wang2.
Abstract
BACKGROUND: Osteonecrosis of the femoral head (ONFH) is a refractory disease which frequently occurs in young and middle-aged people. Recent studies indicated that MMP-14 played an important role in the development of chondrocytes, metabolism of osteoblasts as well as fate decision of hypertrophic chondrocytes. The aim of this study was to investigate the association between polymorphisms of MMP-14 and steroid-induced osteonecrosis of the femoral head in the Chinese population.Entities:
Keywords: zzm321990MMP-14zzm321990; association study; single-nucleotide polymorphisms; steroid-induced osteonecrosis of the femoral head
Mesh:
Substances:
Year: 2018 PMID: 30548828 PMCID: PMC6393650 DOI: 10.1002/mgg3.519
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Characteristics of cases and controls in this study
| Variable(s) | Case ( | Control ( |
|
|---|---|---|---|
| Sex | |||
| Male | 173 | 197 | <0.001 |
| Female | 113 | 112 | |
| Age, year (mean ± | 41.83 ± 13.14 | 48.75 ± 8.42 | <0.001 |
aTwo‐sided chi‐squared test. bIndependent samples t test.
Allele frequencies in cases and controls and odds ratio estimates for steroid‐induced ONFH
| SNP ID | Gene | Position | Alleles | MAF |
| Ors | 95% CI |
| ||
|---|---|---|---|---|---|---|---|---|---|---|
| A/B | Case | Control | ||||||||
| rs3751488 | MMP14 | 14q11.2 | A/G | 0.291 | 0.301 | 1 | 0.9523 | 0.742 | 1.223 | 0.701489 |
| rs1003349 | MMP14 | 14q11.2 | T/G | 0.474 | 0.441 | 0.2987 | 1.1396 | 0.906 | 1.433 | 0.264037 |
| rs1042703 | MMP14 | 14q11.2 | C/T | 0.005 | 0.008 | 1 | 0.6443 | 0.153 | 2.708 | 0.802734 |
| rs2236302 | MMP14 | 14q11.2 | G/C | 0.129 | 0.118 | 0.09696 | 1.1094 | 0.785 | 1.567 | 0.55576 |
| rs1042704 | MMP14 | 14q11.2 | A/G | 0.026 | 0.031 | 1 | 0.8462 | 0.426 | 1.682 | 0.633195 |
| rs2236303 | MMP14 | 14q11.2 | T/C | 0.505 | 0.468 | 0.4232 | 1.163 | 0.926 | 1.461 | 0.193778 |
| rs2236304 | MMP14 | 14q11.2 | G/C | 0.467 | 0.452 | 0.4175 | 1.0595 | 0.842 | 1.333 | 0.621031 |
Bonferroni's multiple adjustment was applied to the level of significance, which was set at p ≤ 0.00104 (0.05/48). HWE: Hardy–Weinberg equilibrium; MAF: minor allele frequency; OR: odds ratio, SNP: single‐nucleotide polymorphism; 95% CI, 95% confidence interval.
ap was calculated by exact test. bp was calculated by Pearson chi‐squared test.
Primers used for this study
| SNP_ID | 1st‐PCRP | 2nd‐PCRP | UEP_SEQ |
|---|---|---|---|
| rs3751488 | ACGTTGGATGTGTCCCCTTTTCACGTTCAC | ACGTTGGATGAAATTTACCTCCTTTGCAG | tgCCTTTGCAGGCCATA |
| rs1003349 | ACGTTGGATGCTGCACCACAAAAAGGCAAC | ACGTTGGATGGACGTGGTTGTTTTAGCCTG | acttAATCCAATTACAACCAAGAA |
| rs1042703 | ACGTTGGATGCTGAAGCTGCTGCTTTGGG | ACGTTGGATGTGGTCTCGGACCATGTCTC | CCCGCCCCAAGACCC |
| rs2236302 | ACGTTGGATGGCTCGAGCATTCCAGTGAC | ACGTTGGATGGCACAAAATTCTCCGTGTCC | GTGTCCATCCACTGGTAAAA |
| rs1042704 | ACGTTGGATGTTTACCAGTGGATGGACACG | ACGTTGGATGCATAAAGTTGCTGGATGCCC | CCCGGCGGTCATCAT |
| rs2236303 | ACGTTGGATGAAAAGTGGAGCTGATAGAGG | ACGTTGGATGTCCTGGTCTACGCATTTCCC | ATGCCTTGCAGTCTC |
| rs2236304 | ACGTTGGATGGGCATTTCAGACTTAGGAGG | ACGTTGGATGAAGGGTATTGTCTGCCCATC | CTGCCCATCTGTCTGT |
Genotypic model analysis of relationship between SNPs and steroid‐induced ONFH risk
| SNP ID | Model | Genotype | Group = control | Group = hormone | Without adjustment | With adjustment | ||
|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| |||||
| rs2236302 | Codominant | C/C | 237 (76.7%) | 220 (76.9%) | 1 | 0.027 | 1 | 0.038 |
| G/C | 71 (23%) | 58 (20.3%) | 0.88 (0.59–1.30) | 0.89 (0.59–1.34) | ||||
| G/G | 1 (0.3%) | 8 (2.8%) | 8.62 (1.07–69.46) | 8.37 (1.00–69.71) | ||||
| Dominant | C/C | 237 (76.7%) | 220 (76.9%) | 1 | 0.95 | 1 | 0.98 | |
| G/C‐G/G | 72 (23.3%) | 66 (23.1%) | 0.99 (0.67–1.45) | 0.99 (0.67–1.48) | ||||
| Recessive | C/C‐G/C | 308 (99.7%) | 278 (97.2%) | 1 | 0.0089 | 1 | 0.013 | |
| G/G | 1 (0.3%) | 8 (2.8%) | 8.86 (1.10–71.31) | 8.60 (1.03–71.51) | ||||
| Overdominant | C/C‐G/G | 238 (77%) | 228 (79.7%) | 1 | 0.42 | 1 | 0.46 | |
| G/C | 71 (23%) | 58 (20.3%) | 0.85 (0.58–1.26) | 0.86 (0.57–1.29) | ||||
| Log‐additive | — | — | — | 1.11 (0.79–1.57) | 0.56 | 1.12 (0.78–1.60) | 0.55 | |
Bonferroni's multiple adjustment was applied to the level of significance, which was set at p ≤ 0.00104 (0.05/48).
p values were calculated by Wald test by unconditional logistic regression adjusted for age and gender.
p ≤ 0.05.
Figure 1We used the parameters D′ to analyze the linkage disequilibrium (LD) of the SNPs on . Significant LD is indicated by bright red standard colors
The haplotype frequencies of MMP14 polymorphisms and their association with the risk of steroid‐induced ONFH
| Haplotype | rs2236303 | rs2236304 | Freq | Without adjustment | With adjustment | ||
|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| ||||
| 1 | C | C | 0.509 | 1 | — | 1 | — |
| 2 | T | G | 0.45 | 1.12 (0.89–1.42) | 0.34 | 1.09 (0.85–1.40) | 0.48 |
| 3 | T | C | 0.036 | 1.92 (1.00–3.70) | 0.05 | 2.43 (1.20–4.92) | 0.014 |
*p values were calculated by unconditional logistic regression. **p values were calculated by unconditional logistic regression adjusted for age and gender. ***p < 0.05 indicates statistical significance.