Literature DB >> 30529586

A bright future: optogenetics to dissect the spatiotemporal control of cell behavior.

Alexander G Goglia1, Jared E Toettcher2.   

Abstract

Cells sense, process, and respond to extracellular information using signaling networks: collections of proteins that act as precise biochemical sensors. These protein networks are characterized by both complex temporal organization, such as pulses of signaling activity, and by complex spatial organization, where proteins assemble structures at particular locations and times within the cell. Yet despite their ubiquity, studying these spatial and temporal properties has remained challenging because they emerge from the entire protein network rather than a single node, and cannot be easily tuned by drugs or mutations. These challenges are being met by a new generation of optogenetic tools capable of directly controlling the activity of individual signaling nodes over time and the assembly of protein complexes in space. Here, we outline how these recent innovations are being used in conjunction with engineering-influenced experimental design to address longstanding questions in signaling biology.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30529586      PMCID: PMC6382565          DOI: 10.1016/j.cbpa.2018.11.010

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  67 in total

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Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  Near-infrared optogenetic pair for protein regulation and spectral multiplexing.

Authors:  Taras A Redchuk; Evgeniya S Omelina; Konstantin G Chernov; Vladislav V Verkhusha
Journal:  Nat Chem Biol       Date:  2017-03-27       Impact factor: 15.040

3.  Growth factor-induced MAPK network topology shapes Erk response determining PC-12 cell fate.

Authors:  Silvia D M Santos; Peter J Verveer; Philippe I H Bastiaens
Journal:  Nat Cell Biol       Date:  2007-02-18       Impact factor: 28.824

4.  Intracellular production of hydrogels and synthetic RNA granules by multivalent molecular interactions.

Authors:  Hideki Nakamura; Albert A Lee; Ali Sobhi Afshar; Shigeki Watanabe; Elmer Rho; Shiva Razavi; Allister Suarez; Yu-Chun Lin; Makoto Tanigawa; Brian Huang; Robert DeRose; Diana Bobb; William Hong; Sandra B Gabelli; John Goutsias; Takanari Inoue
Journal:  Nat Mater       Date:  2017-11-06       Impact factor: 43.841

5.  Linear motif atlas for phosphorylation-dependent signaling.

Authors:  Martin Lee Miller; Lars Juhl Jensen; Francesca Diella; Claus Jørgensen; Michele Tinti; Lei Li; Marilyn Hsiung; Sirlester A Parker; Jennifer Bordeaux; Thomas Sicheritz-Ponten; Marina Olhovsky; Adrian Pasculescu; Jes Alexander; Stefan Knapp; Nikolaj Blom; Peer Bork; Shawn Li; Gianni Cesareni; Tony Pawson; Benjamin E Turk; Michael B Yaffe; Søren Brunak; Rune Linding
Journal:  Sci Signal       Date:  2008-09-02       Impact factor: 8.192

6.  A LOV2 domain-based optogenetic tool to control protein degradation and cellular function.

Authors:  Christian Renicke; Daniel Schuster; Svetlana Usherenko; Lars-Oliver Essen; Christof Taxis
Journal:  Chem Biol       Date:  2013-04-18

7.  Rapid blue-light-mediated induction of protein interactions in living cells.

Authors:  Matthew J Kennedy; Robert M Hughes; Leslie A Peteya; Joel W Schwartz; Michael D Ehlers; Chandra L Tucker
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8.  Control of Protein Activity and Cell Fate Specification via Light-Mediated Nuclear Translocation.

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9.  Light-induced nuclear export reveals rapid dynamics of epigenetic modifications.

Authors:  Hayretin Yumerefendi; Andrew Michael Lerner; Seth Parker Zimmerman; Klaus Hahn; James E Bear; Brian D Strahl; Brian Kuhlman
Journal:  Nat Chem Biol       Date:  2016-04-18       Impact factor: 15.040

10.  LOVTRAP: an optogenetic system for photoinduced protein dissociation.

Authors:  Hui Wang; Marco Vilela; Andreas Winkler; Miroslaw Tarnawski; Ilme Schlichting; Hayretin Yumerefendi; Brian Kuhlman; Rihe Liu; Gaudenz Danuser; Klaus M Hahn
Journal:  Nat Methods       Date:  2016-07-18       Impact factor: 28.547

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  14 in total

1.  Visualization and Manipulation of Intracellular Signaling.

Authors:  Yuhei Goto; Yohei Kondo; Kazuhiro Aoki
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 2.  A guide to the optogenetic regulation of endogenous molecules.

Authors:  Kyrylo Yu Manoilov; Vladislav V Verkhusha; Daria M Shcherbakova
Journal:  Nat Methods       Date:  2021-08-26       Impact factor: 28.547

Review 3.  Optical control of neuronal ion channels and receptors.

Authors:  Pierre Paoletti; Graham C R Ellis-Davies; Alexandre Mourot
Journal:  Nat Rev Neurosci       Date:  2019-09       Impact factor: 34.870

Review 4.  Optogenetics: The Art of Illuminating Complex Signaling Pathways.

Authors:  Mark Shaaya; Jordan Fauser; Andrei V Karginov
Journal:  Physiology (Bethesda)       Date:  2021-01-01

5.  A brief introduction to biophotonic techniques and methods.

Authors:  Qingming Luo
Journal:  Sci China Life Sci       Date:  2020-12-01       Impact factor: 6.038

6.  Optogenetic control of gut bacterial metabolism to promote longevity.

Authors:  Lucas A Hartsough; Mooncheol Park; Matthew V Kotlajich; John Tyler Lazar; Bing Han; Chih-Chun J Lin; Elena Musteata; Lauren Gambill; Meng C Wang; Jeffrey J Tabor
Journal:  Elife       Date:  2020-12-16       Impact factor: 8.140

7.  Optogenetic Tuning of Ligand Binding to The Human T cell Receptor Using The opto-ligand-TCR System.

Authors:  O Sascha Yousefi; Maximilian Hörner; Maximilian Wess; Vincent Idstein; Wilfried Weber; Wolfgang W A Schamel
Journal:  Bio Protoc       Date:  2020-03-05

Review 8.  Nanoscale programming of cellular and physiological phenotypes: inorganic meets organic programming.

Authors:  Nikolay V Dokholyan
Journal:  NPJ Syst Biol Appl       Date:  2021-03-11

9.  Light-Inducible Recombinases for Bacterial Optogenetics.

Authors:  Michael B Sheets; Wilson W Wong; Mary J Dunlop
Journal:  ACS Synth Biol       Date:  2020-01-21       Impact factor: 5.110

10.  Optical control of ERK and AKT signaling promotes axon regeneration and functional recovery of PNS and CNS in Drosophila.

Authors:  Qin Wang; Huaxun Fan; Feng Li; Savanna S Skeeters; Vishnu V Krishnamurthy; Yuanquan Song; Kai Zhang
Journal:  Elife       Date:  2020-10-06       Impact factor: 8.140

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