Literature DB >> 30528914

Solid phase synthesis and spectroscopic characterization of the active and inactive forms of bacteriophage S21 pinholin protein.

Daniel L Drew1, Tanbir Ahammad1, Rachel A Serafin1, Brandon J Butcher1, Katherine R Clowes1, Zachary Drake1, Indra D Sahu1, Robert M McCarrick1, Gary A Lorigan2.   

Abstract

The mechanism for the lysis pathway of double-stranded DNA bacteriophages involves a small hole-forming class of membrane proteins, the holins. This study focuses on a poorly characterized class of holins, the pinholin, of which the S21 protein of phage ϕ21 is the prototype. Here we report the first in vitro synthesis of the wildtype form of the S21 pinholin, S2168, and negative-dominant mutant form, S21IRS, both prepared using solid phase peptide synthesis and studied using biophysical techniques. Both forms of the pinholin were labeled with a nitroxide spin label and successfully incorporated into both bicelles and multilamellar vesicles which are membrane mimetic systems. Circular dichroism revealed the two forms were both >80% alpha helical, in agreement with the predictions based on the literature. The molar ellipticity ratio [θ]222/[θ]208 for both forms of the pinholin was 1.4, suggesting a coiled-coil tertiary structure in the bilayer consistent with the proposed oligomerization step in models for the mechanism of hole formation. 31P solid-state NMR spectroscopic data on pinholin indicate a strong interaction of both forms of the pinholin with the membrane headgroups. The 31P NMR data has an axially symmetric line shape which is consistent with lamellar phase proteoliposomes lipid mimetics.
Copyright © 2018. Published by Elsevier Inc.

Entities:  

Keywords:  Bacteriophage S21 pinholin; Circular dichroism; Electron paramagnetic resonance spectroscopy; Solid phase peptide synthesis; Solid state-NMR spectroscopy

Mesh:

Substances:

Year:  2018        PMID: 30528914      PMCID: PMC6328262          DOI: 10.1016/j.ab.2018.12.003

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  35 in total

1.  Characterization of the dual start motif of a class II holin gene.

Authors:  M Barenboim; C Y Chang; F dib Hajj; R Young
Journal:  Mol Microbiol       Date:  1999-05       Impact factor: 3.501

2.  Phages will out: strategies of host cell lysis.

Authors:  I Young; I Wang; W D Roof
Journal:  Trends Microbiol       Date:  2000-03       Impact factor: 17.079

3.  Topological dynamics of holins in programmed bacterial lysis.

Authors:  Taehyun Park; Douglas K Struck; John F Deaton; Ry Young
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-15       Impact factor: 11.205

4.  Structure of the lethal phage pinhole.

Authors:  Ting Pang; Christos G Savva; Karen G Fleming; Douglas K Struck; Ry Young
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-27       Impact factor: 11.205

5.  Probing coiled-coil assembly by paramagnetic NMR spectroscopy.

Authors:  TingTing Zheng; Aimee Boyle; Hana Robson Marsden; Dayenne Valdink; Giuliana Martelli; Jan Raap; Alexander Kros
Journal:  Org Biomol Chem       Date:  2014-11-27       Impact factor: 3.876

6.  Conformational changes of the HsDHODH N-terminal Microdomain via DEER Spectroscopy.

Authors:  Eduardo F Vicente; Indra D Sahu; Antonio J Costa-Filho; Eduardo M Cilli; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2015-07-02       Impact factor: 2.991

7.  Phospholamban and its phosphorylated form interact differently with lipid bilayers: a 31P, 2H, and 13C solid-state NMR spectroscopic study.

Authors:  Shadi Abu-Baker; Gary A Lorigan
Journal:  Biochemistry       Date:  2006-11-07       Impact factor: 3.162

Review 8.  Concepts and Methods of Solid-State NMR Spectroscopy Applied to Biomembranes.

Authors:  Trivikram R Molugu; Soohyun Lee; Michael F Brown
Journal:  Chem Rev       Date:  2017-09-14       Impact factor: 60.622

Review 9.  Use of electron paramagnetic resonance to solve biochemical problems.

Authors:  Indra D Sahu; Robert M McCarrick; Gary A Lorigan
Journal:  Biochemistry       Date:  2013-08-20       Impact factor: 3.162

10.  Investigating the Secondary Structure of Membrane Peptides Utilizing Multiple 2H-Labeled Hydrophobic Amino Acids via Electron Spin Echo Envelope Modulation (ESEEM) Spectroscopy.

Authors:  Lishan Liu; Indra D Sahu; Lauren Bottorf; Robert M McCarrick; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2018-04-12       Impact factor: 2.991

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  5 in total

1.  Conformational Differences Are Observed for the Active and Inactive Forms of Pinholin S21 Using DEER Spectroscopy.

Authors:  Tanbir Ahammad; Daniel L Drew; Indra D Sahu; Rasal H Khan; Brandon J Butcher; Rachel A Serafin; Alberto P Galende; Robert M McCarrick; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2020-12-08       Impact factor: 2.991

2.  Structural Dynamics and Topology of the Inactive Form of S21 Holin in a Lipid Bilayer Using Continuous-Wave Electron Paramagnetic Resonance Spectroscopy.

Authors:  Tanbir Ahammad; Daniel L Drew; Rasal H Khan; Indra D Sahu; Emily Faul; Tianyan Li; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2020-06-19       Impact factor: 2.991

3.  Pinholin S21 mutations induce structural topology and conformational changes.

Authors:  Tanbir Ahammad; Rasal H Khan; Indra D Sahu; Daniel L Drew; Emily Faul; Tianyan Li; Robert M McCarrick; Gary A Lorigan
Journal:  Biochim Biophys Acta Biomembr       Date:  2021-09-07       Impact factor: 4.019

4.  Structural and functional characterization of the pore-forming domain of pinholin S2168.

Authors:  Lena M E Steger; Annika Kohlmeyer; Parvesh Wadhwani; Jochen Bürck; Erik Strandberg; Johannes Reichert; Stephan L Grage; Sergii Afonin; Marin Kempfer; Anne C Görner; Julia Koch; Torsten H Walther; Anne S Ulrich
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-05       Impact factor: 11.205

5.  Active S2168 and inactive S21IRS pinholin interact differently with the lipid bilayer: A 31P and 2H solid state NMR study.

Authors:  Daniel L Drew; Brandon Butcher; Indra D Sahu; Tanbir Ahammad; Gunjan Dixit; Gary A Lorigan
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-03-05       Impact factor: 3.747

  5 in total

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