Literature DB >> 30510061

Imaging the Life and Death of mRNAs in Single Cells.

Jeffrey A Chao1, Timothée Lionnet2.   

Abstract

RNA plays a central role in gene expression from its transcription in the nucleus through translation and degradation in the cytoplasm. Technological advances in fluorescent microscopy and labeling methodologies have made it possible to detect single molecules of RNA in both fixed and living cells. Here, we focus on the recent developments in RNA imaging that have allowed quantitatively measuring the lives of individual transcripts from birth to death and all the events in between in single cells and tissues. Direct observation of RNAs within their native cellular environment has revealed a complex layer of spatial and temporal regulation that has profoundly impacted our understanding of RNA biology.
Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2018        PMID: 30510061      PMCID: PMC6280700          DOI: 10.1101/cshperspect.a032086

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  81 in total

1.  The myosin motor, Myo4p, binds Ash1 mRNA via the adapter protein, She3p.

Authors:  P A Takizawa; R D Vale
Journal:  Proc Natl Acad Sci U S A       Date:  2000-05-09       Impact factor: 11.205

2.  Single-cell gene expression profiling.

Authors:  Jeffrey M Levsky; Shailesh M Shenoy; Rossanna C Pezo; Robert H Singer
Journal:  Science       Date:  2002-08-02       Impact factor: 47.728

3.  High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis.

Authors:  Jianbo Chen; Olga Nikolaitchik; Jatinder Singh; Andrew Wright; Craig E Bencsics; John M Coffin; Na Ni; Stephen Lockett; Vinay K Pathak; Wei-Shau Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-23       Impact factor: 11.205

Review 4.  Passive Noise Filtering by Cellular Compartmentalization.

Authors:  Thomas Stoeger; Nico Battich; Lucas Pelkmans
Journal:  Cell       Date:  2016-03-10       Impact factor: 41.582

5.  Visualization and analysis of gene expression in tissue sections by spatial transcriptomics.

Authors:  Patrik L Ståhl; Fredrik Salmén; Sanja Vickovic; Anna Lundmark; José Fernández Navarro; Jens Magnusson; Stefania Giacomello; Michaela Asp; Jakub O Westholm; Mikael Huss; Annelie Mollbrink; Sten Linnarsson; Simone Codeluppi; Åke Borg; Fredrik Pontén; Paul Igor Costea; Pelin Sahlén; Jan Mulder; Olaf Bergmann; Joakim Lundeberg; Jonas Frisén
Journal:  Science       Date:  2016-07-01       Impact factor: 47.728

Review 6.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

7.  Transcription of functionally related constitutive genes is not coordinated.

Authors:  Saumil J Gandhi; Daniel Zenklusen; Timothée Lionnet; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2010-12-05       Impact factor: 15.369

8.  Cell-to-cell variability of alternative RNA splicing.

Authors:  Zeev Waks; Allon M Klein; Pamela A Silver
Journal:  Mol Syst Biol       Date:  2011-07-05       Impact factor: 11.429

9.  Drosophila germ granules are structured and contain homotypic mRNA clusters.

Authors:  Tatjana Trcek; Markus Grosch; Andrew York; Hari Shroff; Timothée Lionnet; Ruth Lehmann
Journal:  Nat Commun       Date:  2015-08-05       Impact factor: 14.919

10.  Single-molecule RNA detection at depth by hybridization chain reaction and tissue hydrogel embedding and clearing.

Authors:  Sheel Shah; Eric Lubeck; Maayan Schwarzkopf; Ting-Fang He; Alon Greenbaum; Chang Ho Sohn; Antti Lignell; Harry M T Choi; Viviana Gradinaru; Niles A Pierce; Long Cai
Journal:  Development       Date:  2016-06-24       Impact factor: 6.868

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  4 in total

Review 1.  Following the messenger: Recent innovations in live cell single molecule fluorescence imaging.

Authors:  Andreas Schmidt; Guoming Gao; Saffron R Little; Ameya P Jalihal; Nils G Walter
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-01-28       Impact factor: 9.957

2.  Single-cell transcriptomics identifies Gadd45b as a regulator of herpesvirus-reactivating neurons.

Authors:  Hui-Lan Hu; Kalanghad P Srinivas; Shuoshuo Wang; Moses V Chao; Timothee Lionnet; Ian Mohr; Angus C Wilson; Daniel P Depledge; Tony T Huang
Journal:  EMBO Rep       Date:  2021-11-29       Impact factor: 8.807

3.  Specific RNA Visualization at Electron Microscopy via Terbium Citrate Vapors.

Authors:  Claudio Casali; Lorena Zannino; Marco Biggiogera
Journal:  Methods Mol Biol       Date:  2023

Review 4.  The Regulation of RNA Modification Systems: The Next Frontier in Epitranscriptomics?

Authors:  Matthias R Schaefer
Journal:  Genes (Basel)       Date:  2021-02-26       Impact factor: 4.096

  4 in total

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