Literature DB >> 26967282

Passive Noise Filtering by Cellular Compartmentalization.

Thomas Stoeger1, Nico Battich1, Lucas Pelkmans2.   

Abstract

Chemical reactions contain an inherent element of randomness, which presents itself as noise that interferes with cellular processes and communication. Here we discuss the ability of the spatial partitioning of molecular systems to filter and, thus, remove noise, while preserving regulated and predictable differences between single living cells. In contrast to active noise filtering by network motifs, cellular compartmentalization is highly effective and easily scales to numerous systems without requiring a substantial usage of cellular energy. We will use passive noise filtering by the eukaryotic cell nucleus as an example of how this increases predictability of transcriptional output, with possible implications for the evolution of complex multicellularity.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2016        PMID: 26967282     DOI: 10.1016/j.cell.2016.02.005

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  26 in total

Review 1.  Imaging the Life and Death of mRNAs in Single Cells.

Authors:  Jeffrey A Chao; Timothée Lionnet
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-12-03       Impact factor: 10.005

Review 2.  Overcoming randomness does not rule out the importance of inherent randomness for functionality.

Authors:  Yaron Ilan
Journal:  J Biosci       Date:  2019-12       Impact factor: 1.826

Review 3.  A framework for understanding the functions of biomolecular condensates across scales.

Authors:  Andrew S Lyon; William B Peeples; Michael K Rosen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-11-09       Impact factor: 94.444

Review 4.  Phase separation in transcription factor dynamics and chromatin organization.

Authors:  Kaustubh Wagh; David A Garcia; Arpita Upadhyaya
Journal:  Curr Opin Struct Biol       Date:  2021-07-22       Impact factor: 6.809

5.  Physical theory of biological noise buffering by multicomponent phase separation.

Authors:  Dan Deviri; Samuel A Safran
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

Review 6.  Deciphering transcriptional and functional heterogeneity in hematopoiesis with single-cell genomics.

Authors:  Jorge D Martin-Rufino; Vijay G Sankaran
Journal:  Curr Opin Hematol       Date:  2021-07-01       Impact factor: 3.218

7.  An automated workflow for quantifying RNA transcripts in individual cells in large data-sets.

Authors:  Matthew C Pharris; Tzu-Ching Wu; Xinping Chen; Xu Wang; David M Umulis; Vikki M Weake; Tamara L Kinzer-Ursem
Journal:  MethodsX       Date:  2017-09-01

Review 8.  Shaping development by stochasticity and dynamics in gene regulation.

Authors:  Peng Dong; Zhe Liu
Journal:  Open Biol       Date:  2017-05       Impact factor: 6.411

9.  Cytoplasmic Amplification of Transcriptional Noise Generates Substantial Cell-to-Cell Variability.

Authors:  Maike M K Hansen; Ravi V Desai; Michael L Simpson; Leor S Weinberger
Journal:  Cell Syst       Date:  2018-09-19       Impact factor: 10.304

10.  TNF stimulation primarily modulates transcriptional burst size of NF-κB-regulated genes.

Authors:  Victor L Bass; Victor C Wong; M Elise Bullock; Suzanne Gaudet; Kathryn Miller-Jensen
Journal:  Mol Syst Biol       Date:  2021-07       Impact factor: 11.429

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.