Literature DB >> 30481453

SchNetPack: A Deep Learning Toolbox For Atomistic Systems.

K T Schütt1, P Kessel1, M Gastegger1, K A Nicoli1, A Tkatchenko2, K-R Müller1,3,4.   

Abstract

SchNetPack is a toolbox for the development and application of deep neural networks that predict potential energy surfaces and other quantum-chemical properties of molecules and materials. It contains basic building blocks of atomistic neural networks, manages their training, and provides simple access to common benchmark datasets. This allows for an easy implementation and evaluation of new models. For now, SchNetPack includes implementations of (weighted) atom-centered symmetry functions and the deep tensor neural network SchNet, as well as ready-to-use scripts that allow one to train these models on molecule and material datasets. Based on the PyTorch deep learning framework, SchNetPack allows one to efficiently apply the neural networks to large datasets with millions of reference calculations, as well as parallelize the model across multiple GPUs. Finally, SchNetPack provides an interface to the Atomic Simulation Environment in order to make trained models easily accessible to researchers that are not yet familiar with neural networks.

Year:  2018        PMID: 30481453     DOI: 10.1021/acs.jctc.8b00908

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  22 in total

1.  Predicting Molecular Energy Using Force-Field Optimized Geometries and Atomic Vector Representations Learned from an Improved Deep Tensor Neural Network.

Authors:  Jianing Lu; Cheng Wang; Yingkai Zhang
Journal:  J Chem Theory Comput       Date:  2019-06-12       Impact factor: 6.006

2.  Machine Learning for Electronically Excited States of Molecules.

Authors:  Julia Westermayr; Philipp Marquetand
Journal:  Chem Rev       Date:  2020-11-19       Impact factor: 60.622

Review 3.  Protein Function Analysis through Machine Learning.

Authors:  Chris Avery; John Patterson; Tyler Grear; Theodore Frater; Donald J Jacobs
Journal:  Biomolecules       Date:  2022-09-06

4.  Deep learning study of tyrosine reveals that roaming can lead to photodamage.

Authors:  Julia Westermayr; Michael Gastegger; Dóra Vörös; Lisa Panzenboeck; Florian Joerg; Leticia González; Philipp Marquetand
Journal:  Nat Chem       Date:  2022-06-02       Impact factor: 24.274

5.  NewtonNet: a Newtonian message passing network for deep learning of interatomic potentials and forces.

Authors:  Mojtaba Haghighatlari; Jie Li; Xingyi Guan; Oufan Zhang; Akshaya Das; Christopher J Stein; Farnaz Heidar-Zadeh; Meili Liu; Martin Head-Gordon; Luke Bertels; Hongxia Hao; Itai Leven; Teresa Head-Gordon
Journal:  Digit Discov       Date:  2022-04-27

6.  Deep learning of dynamically responsive chemical Hamiltonians with semiempirical quantum mechanics.

Authors:  Guoqing Zhou; Nicholas Lubbers; Kipton Barros; Sergei Tretiak; Benjamin Nebgen
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-01       Impact factor: 12.779

Review 7.  Accurate Prediction of Aqueous Free Solvation Energies Using 3D Atomic Feature-Based Graph Neural Network with Transfer Learning.

Authors:  Dongdong Zhang; Song Xia; Yingkai Zhang
Journal:  J Chem Inf Model       Date:  2022-04-14       Impact factor: 6.162

8.  Machine Learning Force Fields.

Authors:  Oliver T Unke; Stefan Chmiela; Huziel E Sauceda; Michael Gastegger; Igor Poltavsky; Kristof T Schütt; Alexandre Tkatchenko; Klaus-Robert Müller
Journal:  Chem Rev       Date:  2021-03-11       Impact factor: 60.622

9.  BuRNN: Buffer Region Neural Network Approach for Polarizable-Embedding Neural Network/Molecular Mechanics Simulations.

Authors:  Bettina Lier; Peter Poliak; Philipp Marquetand; Julia Westermayr; Chris Oostenbrink
Journal:  J Phys Chem Lett       Date:  2022-04-25       Impact factor: 6.888

10.  Combining Machine Learning and Computational Chemistry for Predictive Insights Into Chemical Systems.

Authors:  John A Keith; Valentin Vassilev-Galindo; Bingqing Cheng; Stefan Chmiela; Michael Gastegger; Klaus-Robert Müller; Alexandre Tkatchenko
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 60.622

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