Literature DB >> 35655007

Deep learning study of tyrosine reveals that roaming can lead to photodamage.

Julia Westermayr1,2, Michael Gastegger3, Dóra Vörös1, Lisa Panzenboeck1,4, Florian Joerg1,5, Leticia González1,6, Philipp Marquetand7,8,9.   

Abstract

Amino acids are among the building blocks of life, forming peptides and proteins, and have been carefully 'selected' to prevent harmful reactions caused by light. To prevent photodamage, molecules relax from electronic excited states to the ground state faster than the harmful reactions can occur; however, such photochemistry is not fully understood, in part because theoretical simulations of such systems are extremely expensive-with only smaller chromophores accessible. Here, we study the excited-state dynamics of tyrosine using a method based on deep neural networks that leverages the physics underlying quantum chemical data and combines different levels of theory. We reveal unconventional and dynamically controlled 'roaming' dynamics in excited tyrosine that are beyond chemical intuition and compete with other ultrafast deactivation mechanisms. Our findings suggest that the roaming atoms are radicals that can lead to photodamage, offering a new perspective on the photostability and photodamage of biological systems.
© 2022. The Author(s), under exclusive licence to Springer Nature Limited.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 35655007     DOI: 10.1038/s41557-022-00950-z

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.274


  38 in total

1.  Photosynthetic light harvesting by carotenoids: detection of an intermediate excited state.

Authors:  G Cerullo; D Polli; G Lanzani; S De Silvestri; H Hashimoto; R J Cogdell
Journal:  Science       Date:  2002-12-20       Impact factor: 47.728

2.  Optical nano-imaging of gate-tunable graphene plasmons.

Authors:  Jianing Chen; Michela Badioli; Pablo Alonso-González; Sukosin Thongrattanasiri; Florian Huth; Johann Osmond; Marko Spasenović; Alba Centeno; Amaia Pesquera; Philippe Godignon; Amaia Zurutuza Elorza; Nicolas Camara; F Javier García de Abajo; Rainer Hillenbrand; Frank H L Koppens
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

3.  Following a chemical reaction using high-harmonic interferometry.

Authors:  H J Wörner; J B Bertrand; D V Kartashov; P B Corkum; D M Villeneuve
Journal:  Nature       Date:  2010-07-29       Impact factor: 49.962

4.  Photostability of amino acids: photodissociation dynamics of phenylalanine chromophores.

Authors:  Chien-Ming Tseng; Ming-Fu Lin; Yi Lin Yang; Yu Chieh Ho; Chi-Kung Ni; Jia-Lin Chang
Journal:  Phys Chem Chem Phys       Date:  2010-05-21       Impact factor: 3.676

5.  Thymine dimerization in DNA is an ultrafast photoreaction.

Authors:  Wolfgang J Schreier; Tobias E Schrader; Florian O Koller; Peter Gilch; Carlos E Crespo-Hernández; Vijay N Swaminathan; Thomas Carell; Wolfgang Zinth; Bern Kohler
Journal:  Science       Date:  2007-02-02       Impact factor: 47.728

6.  Coherently wired light-harvesting in photosynthetic marine algae at ambient temperature.

Authors:  Elisabetta Collini; Cathy Y Wong; Krystyna E Wilk; Paul M G Curmi; Paul Brumer; Gregory D Scholes
Journal:  Nature       Date:  2010-02-04       Impact factor: 49.962

Review 7.  Inverse molecular design using machine learning: Generative models for matter engineering.

Authors:  Benjamin Sanchez-Lengeling; Alán Aspuru-Guzik
Journal:  Science       Date:  2018-07-26       Impact factor: 47.728

8.  Peptide deactivation: Spectroscopy meets theory.

Authors:  Wolfgang Domcke; Andrzej L Sobolewski
Journal:  Nat Chem       Date:  2013-04       Impact factor: 24.427

9.  The role of pisigma* excited states in the photodissociation of heteroaromatic molecules.

Authors:  M N R Ashfold; B Cronin; A L Devine; R N Dixon; M G D Nix
Journal:  Science       Date:  2006-06-16       Impact factor: 47.728

10.  Cyclobutane Thymine Photodimerization Mechanism Revealed by Nonadiabatic Molecular Dynamics.

Authors:  Clemens Rauer; Juan J Nogueira; Philipp Marquetand; Leticia González
Journal:  J Am Chem Soc       Date:  2016-10-11       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.