Literature DB >> 30467235

You can't always sequence your way out of a tight spot: Next-generation sequencing holds great promise for pathogen detection, but the devil is in the details.

Todd J Treangen1, Mihai Pop2.   

Abstract

Mesh:

Year:  2018        PMID: 30467235      PMCID: PMC6280640          DOI: 10.15252/embr.201847036

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


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  10 in total

Review 1.  Practical Value of Food Pathogen Traceability through Building a Whole-Genome Sequencing Network and Database.

Authors:  Marc W Allard; Errol Strain; David Melka; Kelly Bunning; Steven M Musser; Eric W Brown; Ruth Timme
Journal:  J Clin Microbiol       Date:  2016-03-23       Impact factor: 5.948

2.  Detecting DNA cytosine methylation using nanopore sequencing.

Authors:  Jared T Simpson; Rachael E Workman; P C Zuzarte; Matei David; L J Dursi; Winston Timp
Journal:  Nat Methods       Date:  2017-02-20       Impact factor: 28.547

3.  Whole-genome sequencing and social-network analysis of a tuberculosis outbreak.

Authors:  Jennifer L Gardy; James C Johnston; Shannan J Ho Sui; Victoria J Cook; Lena Shah; Elizabeth Brodkin; Shirley Rempel; Richard Moore; Yongjun Zhao; Robert Holt; Richard Varhol; Inanc Birol; Marcus Lem; Meenu K Sharma; Kevin Elwood; Steven J M Jones; Fiona S L Brinkman; Robert C Brunham; Patrick Tang
Journal:  N Engl J Med       Date:  2011-02-24       Impact factor: 91.245

4.  Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany.

Authors:  David A Rasko; Dale R Webster; Jason W Sahl; Ali Bashir; Nadia Boisen; Flemming Scheutz; Ellen E Paxinos; Robert Sebra; Chen-Shan Chin; Dimitris Iliopoulos; Aaron Klammer; Paul Peluso; Lawrence Lee; Andrey O Kislyuk; James Bullard; Andrew Kasarskis; Susanna Wang; John Eid; David Rank; Julia C Redman; Susan R Steyert; Jakob Frimodt-Møller; Carsten Struve; Andreas M Petersen; Karen A Krogfelt; James P Nataro; Eric E Schadt; Matthew K Waldor
Journal:  N Engl J Med       Date:  2011-07-27       Impact factor: 91.245

5.  Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation.

Authors:  David A Rasko; Patricia L Worsham; Terry G Abshire; Scott T Stanley; Jason D Bannan; Mark R Wilson; Richard J Langham; R Scott Decker; Lingxia Jiang; Timothy D Read; Adam M Phillippy; Steven L Salzberg; Mihai Pop; Matthew N Van Ert; Leo J Kenefic; Paul S Keim; Claire M Fraser-Liggett; Jacques Ravel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  Lack of Evidence for Plague or Anthrax on the New York City Subway.

Authors:  Joel Ackelsberg; Jennifer Rakeman; Scott Hughes; Jeannine Petersen; Paul Mead; Martin Schriefer; Luke Kingry; Alex Hoffmaster; Jay E Gee
Journal:  Cell Syst       Date:  2015-07-29       Impact factor: 10.304

7.  Real-time selective sequencing using nanopore technology.

Authors:  Matthew Loose; Sunir Malla; Michael Stout
Journal:  Nat Methods       Date:  2016-07-25       Impact factor: 28.547

8.  Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak.

Authors:  Andrea Ottesen; Padmini Ramachandran; Elizabeth Reed; James R White; Nur Hasan; Poorani Subramanian; Gina Ryan; Karen Jarvis; Christopher Grim; Ninalynn Daquiqan; Darcy Hanes; Marc Allard; Rita Colwell; Eric Brown; Yi Chen
Journal:  BMC Microbiol       Date:  2016-11-16       Impact factor: 3.605

9.  Draft Genome Sequences from a Novel Clade of Bacillus cereus Sensu Lato Strains, Isolated from the International Space Station.

Authors:  Kasthuri Venkateswaran; Aleksandra Checinska Sielaff; Shashikala Ratnayake; Robert K Pope; Thomas E Blank; Victor G Stepanov; George E Fox; Sandra P van Tongeren; Clinton Torres; Jonathan Allen; Crystal Jaing; Duane Pierson; Jay Perry; Sergey Koren; Adam Phillippy; Joy Klubnik; Todd J Treangen; M J Rosovitz; Nicholas H Bergman
Journal:  Genome Announc       Date:  2017-08-10

10.  Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.

Authors:  Ebrahim Afshinnekoo; Cem Meydan; Shanin Chowdhury; Dyala Jaroudi; Collin Boyer; Nick Bernstein; Julia M Maritz; Darryl Reeves; Jorge Gandara; Sagar Chhangawala; Sofia Ahsanuddin; Amber Simmons; Timothy Nessel; Bharathi Sundaresh; Elizabeth Pereira; Ellen Jorgensen; Sergios-Orestis Kolokotronis; Nell Kirchberger; Isaac Garcia; David Gandara; Sean Dhanraj; Tanzina Nawrin; Yogesh Saletore; Noah Alexander; Priyanka Vijay; Elizabeth M Hénaff; Paul Zumbo; Michael Walsh; Gregory D O'Mullan; Scott Tighe; Joel T Dudley; Anya Dunaif; Sean Ennis; Eoghan O'Halloran; Tiago R Magalhaes; Braden Boone; Angela L Jones; Theodore R Muth; Katie Schneider Paolantonio; Elizabeth Alter; Eric E Schadt; Jeanne Garbarino; Robert J Prill; Jane M Carlton; Shawn Levy; Christopher E Mason
Journal:  Cell Syst       Date:  2015-03-03       Impact factor: 10.304

  10 in total

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