Literature DB >> 30455204

Biological collections for understanding biodiversity in the Anthropocene.

Emily K Meineke1, T Jonathan Davies2,3, Barnabas H Daru4, Charles C Davis5.   

Abstract

Global change has become a central focus of modern biology. Yet, our knowledge of how anthropogenic drivers affect biodiversity and natural resources is limited by a lack of biological data spanning the Anthropocene. We propose that the hundreds of millions of plant, fungal and animal specimens deposited in natural history museums have the potential to transform the field of global change biology. We suggest that museum specimens are underused, particularly in ecological studies, given their capacity to reveal patterns that are not observable from other data sources. Increasingly, museum specimens are becoming mobilized online, providing unparalleled access to physiological, ecological and evolutionary data spanning decades and sometimes centuries. Here, we describe the diversity of collections data archived in museums and provide an overview of the diverse uses and applications of these data as discussed in the accompanying collection of papers within this theme issue. As these unparalleled resources are under threat owing to budget cuts and other institutional pressures, we aim to shed light on the unique discoveries that are possible in museums and, thus, the singular value of natural history collections in a period of rapid change.This article is part of the theme issue 'Biological collections for understanding biodiversity in the Anthropocene'.
© 2018 The Author(s).

Entities:  

Keywords:  Anthropocene; climate change; global change; herbarium; historical data; museum

Mesh:

Year:  2018        PMID: 30455204      PMCID: PMC6282082          DOI: 10.1098/rstb.2017.0386

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  48 in total

Review 1.  Natural history collections as windows on evolutionary processes.

Authors:  Michael W Holmes; Talisin T Hammond; Guinevere O U Wogan; Rachel E Walsh; Katie LaBarbera; Elizabeth A Wommack; Felipe M Martins; Jeremy C Crawford; Katya L Mack; Luke M Bloch; Michael W Nachman
Journal:  Mol Ecol       Date:  2016-02       Impact factor: 6.185

2.  Herbarium records are reliable sources of phenological change driven by climate and provide novel insights into species' phenological cueing mechanisms.

Authors:  Charles C Davis; Charles G Willis; Bryan Connolly; Courtland Kelly; Aaron M Ellison
Journal:  Am J Bot       Date:  2015-10-08       Impact factor: 3.844

Review 3.  Botanic gardens are an untapped resource for studying the functional ecology of tropical plants.

Authors:  Timothy M Perez; Oscar Valverde-Barrantes; Catherine Bravo; Tyeen C Taylor; Belén Fadrique; J Aaron Hogan; Christine J Pardo; James T Stroud; Christopher Baraloto; Kenneth J Feeley
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-19       Impact factor: 6.237

4.  A novel proof of concept for capturing the diversity of endophytic fungi preserved in herbarium specimens.

Authors:  Barnabas H Daru; Elizabeth A Bowman; Donald H Pfister; A Elizabeth Arnold
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-19       Impact factor: 6.237

5.  A physiological trait-based approach to predicting the responses of species to experimental climate warming.

Authors:  Sarah E Diamond; Lauren M Nichols; Neil McCoy; Christopher Hirsch; Shannon L Pelini; Nathan J Sanders; Aaron M Ellison; Nicholas J Gotelli; Robert R Dunn
Journal:  Ecology       Date:  2012-11       Impact factor: 5.499

6.  Computer vision cracks the leaf code.

Authors:  Peter Wilf; Shengping Zhang; Sharat Chikkerur; Stefan A Little; Scott L Wing; Thomas Serre
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-07       Impact factor: 11.205

7.  Digitization of museum collections holds the potential to enhance researcher diversity.

Authors:  Joshua A Drew; Corrie S Moreau; Melanie L J Stiassny
Journal:  Nat Ecol Evol       Date:  2017-12       Impact factor: 15.460

8.  The plant microbiome and its importance for plant and human health.

Authors:  Gabriele Berg; Martin Grube; Michael Schloter; Kornelia Smalla
Journal:  Front Microbiol       Date:  2014-09-17       Impact factor: 5.640

9.  Studying plant-pollinator interactions in a changing climate: A review of approaches.

Authors:  Diane L Byers
Journal:  Appl Plant Sci       Date:  2017-06-28       Impact factor: 1.936

Review 10.  The use and misuse of herbarium specimens in evaluating plant extinction risks.

Authors:  Eimear Nic Lughadha; Barnaby E Walker; Cátia Canteiro; Helen Chadburn; Aaron P Davis; Serene Hargreaves; Eve J Lucas; André Schuiteman; Emma Williams; Steven P Bachman; David Baines; Amy Barker; Andrew P Budden; Julia Carretero; James J Clarkson; Alexandra Roberts; Malin C Rivers
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-19       Impact factor: 6.237

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  26 in total

1.  Monarch butterfly trends are sensitive to unexamined changes in museum collections over time.

Authors:  Tyson Wepprich
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-09       Impact factor: 11.205

Review 2.  The history and impact of digitization and digital data mobilization on biodiversity research.

Authors:  Gil Nelson; Shari Ellis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-19       Impact factor: 6.237

3.  Sex biases in bird and mammal natural history collections.

Authors:  Natalie Cooper; Alexander L Bond; Joshua L Davis; Roberto Portela Miguez; Louise Tomsett; Kristofer M Helgen
Journal:  Proc Biol Sci       Date:  2019-10-23       Impact factor: 5.349

4.  Plant adaptation to climate change - Where are we?

Authors:  Jill Anderson; Bao-Hua Song
Journal:  J Syst Evol       Date:  2020-06-18       Impact factor: 4.098

5.  Comparing fruiting phenology across two historical datasets: Thoreau's observations and herbarium specimens.

Authors:  Tara K Miller; Amanda S Gallinat; Linnea C Smith; Richard B Primack
Journal:  Ann Bot       Date:  2021-07-30       Impact factor: 4.357

6.  Applying machine learning to investigate long-term insect-plant interactions preserved on digitized herbarium specimens.

Authors:  Emily K Meineke; Carlo Tomasi; Song Yuan; Kathleen M Pryer
Journal:  Appl Plant Sci       Date:  2020-07-01       Impact factor: 1.936

7.  Using computer vision on herbarium specimen images to discriminate among closely related horsetails (Equisetum).

Authors:  Kathleen M Pryer; Carlo Tomasi; Xiaohan Wang; Emily K Meineke; Michael D Windham
Journal:  Appl Plant Sci       Date:  2020-07-01       Impact factor: 1.936

8.  Can ancestry and morphology be used as surrogates for species niche relationships?

Authors:  Friedrich W Keppeler; Kirk O Winemiller
Journal:  Ecol Evol       Date:  2020-06-03       Impact factor: 2.912

9.  Temperature controls phenology in continuously flowering Protea species of subtropical Africa.

Authors:  Barnabas H Daru; Matthew M Kling; Emily K Meineke; Abraham E van Wyk
Journal:  Appl Plant Sci       Date:  2019-03-07       Impact factor: 1.936

10.  Biodiversity Science and the Twenty-First Century Workforce.

Authors:  Elizabeth R Ellwood; Jocelyn Anne Sessa; Joel K Abraham; Amber E Budden; Natalie Douglas; Robert Guralnick; Erica Krimmel; Tom Langen; Debra Linton; Molly Phillips; Pamela S Soltis; Marie Studer; Lisa D White; Jason Williams; Anna K Monfils
Journal:  Bioscience       Date:  2019-12-18       Impact factor: 8.589

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