Literature DB >> 30451485

Recent Structural Insights into Polycomb Repressive Complex 2 Regulation and Substrate Binding.

Vignesh Kasinath1,2, Simon Poepsel1,2, Eva Nogales1,2,3,4.   

Abstract

Polycomb group proteins are transcriptional repressors controlling gene expression patterns and maintaining cell type identity. The chemical modifications of histones and DNA caused by the regulated activity of chromatin-modifying enzymes such as Polycomb help establish and maintain such expression patterns. Polycomb repressive complex 2 (PRC2) is the only known methyltransferase specific for histone H3 lysine 27 (H3K27) and catalyzes its trimethylation leading to the repressive H3K27me3 mark. Structural biology has made important contributions to our understanding of the molecular mechanisms that ensure the spatiotemporal regulation of PRC2 activity and the establishment of inactive chromatin domains marked by H3K27me3. In this review, we discuss the recent structural studies that have advanced our understanding of PRC2 function, in particular the roles of intersubunit interactions in complex assembly and the regulation of methyltransferase activity, as well as the mechanism of local H3K27me3 spreading leading to repressive domains.

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Year:  2018        PMID: 30451485      PMCID: PMC6438374          DOI: 10.1021/acs.biochem.8b01064

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  52 in total

1.  Structural basis of EZH2 recognition by EED.

Authors:  Zhifu Han; Xinmiao Xing; Min Hu; Yin Zhang; Peiyuan Liu; Jijie Chai
Journal:  Structure       Date:  2007-10       Impact factor: 5.006

2.  A Family of Vertebrate-Specific Polycombs Encoded by the LCOR/LCORL Genes Balance PRC2 Subtype Activities.

Authors:  Eric Conway; Emilia Jerman; Evan Healy; Shinsuke Ito; Daniel Holoch; Giorgio Oliviero; Orla Deevy; Eleanor Glancy; Darren J Fitzpatrick; Marlena Mucha; Ariane Watson; Alan M Rice; Paul Chammas; Christine Huang; Indigo Pratt-Kelly; Yoko Koseki; Manabu Nakayama; Tomoyuki Ishikura; Gundula Streubel; Kieran Wynne; Karsten Hokamp; Aoife McLysaght; Claudio Ciferri; Luciano Di Croce; Gerard Cagney; Raphaël Margueron; Haruhiko Koseki; Adrian P Bracken
Journal:  Mol Cell       Date:  2018-04-05       Impact factor: 17.970

3.  Cryptic RNA-binding by PRC2 components EZH2 and SUZ12.

Authors:  Juan G Betancur; Yukihide Tomari
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  Characterization of EZH1, a human homolog of Drosophila Enhancer of zeste near BRCA1.

Authors:  K J Abel; L C Brody; J M Valdes; M R Erdos; D R McKinley; L H Castilla; S D Merajver; F J Couch; L S Friedman; E A Ostermeyer; E D Lynch; M C King; P L Welcsh; S Osborne-Lawrence; M Spillman; A M Bowcock; F S Collins; B L Weber
Journal:  Genomics       Date:  1996-10-15       Impact factor: 5.736

Review 5.  H3K27 methylation: a promiscuous repressive chromatin mark.

Authors:  Elizabeth T Wiles; Eric U Selker
Journal:  Curr Opin Genet Dev       Date:  2016-12-08       Impact factor: 5.578

6.  Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination.

Authors:  Ragnhild Eskeland; Martin Leeb; Graeme R Grimes; Clémence Kress; Shelagh Boyle; Duncan Sproul; Nick Gilbert; Yuhong Fan; Arthur I Skoultchi; Anton Wutz; Wendy A Bickmore
Journal:  Mol Cell       Date:  2010-05-14       Impact factor: 17.970

7.  Conserved RNA-binding specificity of polycomb repressive complex 2 is achieved by dispersed amino acid patches in EZH2.

Authors:  Yicheng Long; Ben Bolanos; Lihu Gong; Wei Liu; Karen J Goodrich; Xin Yang; Siming Chen; Anne R Gooding; Karen A Maegley; Ketan S Gajiwala; Alexei Brooun; Thomas R Cech; Xin Liu
Journal:  Elife       Date:  2017-11-29       Impact factor: 8.140

8.  Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells.

Authors:  Xiaohua Shen; Woojin Kim; Yuko Fujiwara; Matthew D Simon; Yingchun Liu; Matthew R Mysliwiec; Guo-Cheng Yuan; Youngsook Lee; Stuart H Orkin
Journal:  Cell       Date:  2009-12-24       Impact factor: 41.582

9.  Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin.

Authors:  Syuzo Kaneko; Roberto Bonasio; Ricardo Saldaña-Meyer; Takahaki Yoshida; Jinsook Son; Koichiro Nishino; Akihiro Umezawa; Danny Reinberg
Journal:  Mol Cell       Date:  2013-12-26       Impact factor: 17.970

10.  Polycomb repressive complex 2 structure with inhibitor reveals a mechanism of activation and drug resistance.

Authors:  Alexei Brooun; Ketan S Gajiwala; Ya-Li Deng; Wei Liu; Ben Bolaños; Patrick Bingham; You-Ai He; Wade Diehl; Nicole Grable; Pei-Pei Kung; Scott Sutton; Karen A Maegley; Xiu Yu; Al E Stewart
Journal:  Nat Commun       Date:  2016-04-28       Impact factor: 14.919

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  9 in total

1.  Current outcomes when optimizing 'standard' sample preparation for single-particle cryo-EM.

Authors:  B Carragher; Y Cheng; A Frost; R M Glaeser; G C Lander; E Nogales; H-W Wang
Journal:  J Microsc       Date:  2019-10-07       Impact factor: 1.758

Review 2.  Polycomb repressive 2 complex-Molecular mechanisms of function.

Authors:  Valentina L Kouznetsova; Alex Tchekanov; Xiaoming Li; Xiaowen Yan; Igor F Tsigelny
Journal:  Protein Sci       Date:  2019-06-10       Impact factor: 6.725

Review 3.  Dynamic Competition of Polycomb and Trithorax in Transcriptional Programming.

Authors:  Mitzi I Kuroda; Hyuckjoon Kang; Sandip De; Judith A Kassis
Journal:  Annu Rev Biochem       Date:  2020-01-13       Impact factor: 23.643

4.  Cooperative DNA looping by PRC2 complexes.

Authors:  Xingcheng Lin; Rachel Leicher; Shixin Liu; Bin Zhang
Journal:  Nucleic Acids Res       Date:  2021-06-21       Impact factor: 16.971

Review 5.  Polycomb Repressive Complex 2: a Dimmer Switch of Gene Regulation in Calvarial Bone Development.

Authors:  Timothy Nehila; James W Ferguson; Radhika P Atit
Journal:  Curr Osteoporos Rep       Date:  2020-08       Impact factor: 5.096

Review 6.  PRC2 is high maintenance.

Authors:  Jia-Ray Yu; Chul-Hwan Lee; Ozgur Oksuz; James M Stafford; Danny Reinberg
Journal:  Genes Dev       Date:  2019-05-23       Impact factor: 11.361

Review 7.  Polycomb Repressive Complex 2 in Eukaryotes-An Evolutionary Perspective.

Authors:  Mallika Vijayanathan; María Guadalupe Trejo-Arellano; Iva Mozgová
Journal:  Epigenomes       Date:  2022-01-17

Review 8.  De Novo Polycomb Recruitment and Repressive Domain Formation.

Authors:  Itzel Alejandra Hernández-Romero; Victor Julian Valdes
Journal:  Epigenomes       Date:  2022-08-22

Review 9.  JMJD3: a critical epigenetic regulator in stem cell fate.

Authors:  Yuanjie Ding; Yuanchun Yao; Xingmu Gong; Qi Zhuo; Jinhua Chen; Miao Tian; Maryam Farzaneh
Journal:  Cell Commun Signal       Date:  2021-07-03       Impact factor: 5.712

  9 in total

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