Literature DB >> 31928411

Dynamic Competition of Polycomb and Trithorax in Transcriptional Programming.

Mitzi I Kuroda1, Hyuckjoon Kang1, Sandip De2, Judith A Kassis2.   

Abstract

Predicting regulatory potential from primary DNA sequences or transcription factor binding patterns is not possible. However, the annotation of the genome by chromatin proteins, histone modifications, and differential compaction is largely sufficient to reveal the locations of genes and their differential activity states. The Polycomb Group (PcG) and Trithorax Group (TrxG) proteins are the central players in this cell type-specific chromatin organization. PcG function was originally viewed as being solely repressive and irreversible, as observed at the homeotic loci in flies and mammals. However, it is now clear that modular and reversible PcG function is essential at most developmental genes. Focusing mainly on recent advances, we review evidence for how PcG and TrxG patterns change dynamically during cell type transitions. The ability to implement cell type-specific transcriptional programming with exquisite fidelity is essential for normal development.

Entities:  

Keywords:  Polycomb; Trithorax; bivalent chromatin; epigenetics; gene regulation

Mesh:

Substances:

Year:  2020        PMID: 31928411      PMCID: PMC7311296          DOI: 10.1146/annurev-biochem-120219-103641

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  149 in total

Review 1.  Polycomb in Transcriptional Phase Transition of Developmental Genes.

Authors:  Takashi Kondo; Shinsuke Ito; Haruhiko Koseki
Journal:  Trends Biochem Sci       Date:  2015-12-08       Impact factor: 13.807

Review 2.  PcG complexes and chromatin silencing.

Authors:  V Pirrotta
Journal:  Curr Opin Genet Dev       Date:  1997-04       Impact factor: 5.578

3.  EPOP Interacts with Elongin BC and USP7 to Modulate the Chromatin Landscape.

Authors:  Robert Liefke; Violetta Karwacki-Neisius; Yang Shi
Journal:  Mol Cell       Date:  2017-01-05       Impact factor: 17.970

4.  Co-ChIP enables genome-wide mapping of histone mark co-occurrence at single-molecule resolution.

Authors:  Assaf Weiner; David Lara-Astiaso; Vladislav Krupalnik; Ohad Gafni; Eyal David; Deborah R Winter; Jacob H Hanna; Ido Amit
Journal:  Nat Biotechnol       Date:  2016-07-25       Impact factor: 54.908

5.  Global changes of H3K27me3 domains and Polycomb group protein distribution in the absence of recruiters Spps or Pho.

Authors:  J Lesley Brown; Ming-An Sun; Judith A Kassis
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-05       Impact factor: 11.205

6.  MOZ and BMI1 play opposing roles during Hox gene activation in ES cells and in body segment identity specification in vivo.

Authors:  Bilal N Sheikh; Natalie L Downer; Belinda Phipson; Hannah K Vanyai; Andrew J Kueh; Davis J McCarthy; Gordon K Smyth; Tim Thomas; Anne K Voss
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-14       Impact factor: 11.205

7.  The Drosophila trithorax protein is a coactivator required to prevent re-establishment of polycomb silencing.

Authors:  Sylvain Poux; Béatrice Horard; Christian J A Sigrist; Vincenzo Pirrotta
Journal:  Development       Date:  2002-05       Impact factor: 6.868

8.  The Drosophila eve insulator Homie promotes eve expression and protects the adjacent gene from repression by polycomb spreading.

Authors:  Miki Fujioka; Guizhi Sun; James B Jaynes
Journal:  PLoS Genet       Date:  2013-10-31       Impact factor: 5.917

9.  Dual functionality of cis-regulatory elements as developmental enhancers and Polycomb response elements.

Authors:  Jelena Erceg; Tibor Pakozdi; Raquel Marco-Ferreres; Yad Ghavi-Helm; Charles Girardot; Adrian P Bracken; Eileen E M Furlong
Journal:  Genes Dev       Date:  2017-04-05       Impact factor: 11.361

10.  Regulation and function of H3K36 di-methylation by the trithorax-group protein complex AMC.

Authors:  Sigrun Schmähling; Arno Meiler; Yoonjung Lee; Arif Mohammed; Katja Finkl; Katharina Tauscher; Lars Israel; Marc Wirth; Julia Philippou-Massier; Helmut Blum; Bianca Habermann; Axel Imhof; Ji-Joon Song; Jürg Müller
Journal:  Development       Date:  2018-04-05       Impact factor: 6.868

View more
  25 in total

1.  Normal Patterns of Histone H3K27 Methylation Require the Histone Variant H2A.Z in Neurospora crassa.

Authors:  Abigail J Courtney; Masayuki Kamei; Aileen R Ferraro; Kexin Gai; Qun He; Shinji Honda; Zachary A Lewis
Journal:  Genetics       Date:  2020-07-10       Impact factor: 4.562

2.  A cis-acting mechanism mediates transcriptional memory at Polycomb target genes in mammals.

Authors:  Daniel Holoch; Michel Wassef; Cecilia Lövkvist; Dina Zielinski; Setareh Aflaki; Bérangère Lombard; Tiphaine Héry; Damarys Loew; Martin Howard; Raphaël Margueron
Journal:  Nat Genet       Date:  2021-11-15       Impact factor: 38.330

3.  A Polycomb domain found in committed cells impairs differentiation when introduced into PRC1 in pluripotent cells.

Authors:  Elizabeth S Jaensch; Jinjin Zhu; Jesse C Cochrane; Sharon K Marr; Theresa A Oei; Manashree Damle; Ethan Z McCaslin; Robert E Kingston
Journal:  Mol Cell       Date:  2021-10-11       Impact factor: 17.970

4.  Kinetic principles underlying pioneer function of GAGA transcription factor in live cells.

Authors:  Xiaona Tang; Taibo Li; Sheng Liu; Jan Wisniewski; Qinsi Zheng; Yikang Rong; Luke D Lavis; Carl Wu
Journal:  Nat Struct Mol Biol       Date:  2022-07-14       Impact factor: 18.361

5.  Not all Is SET for Methylation: Evolution of Eukaryotic Protein Methyltransferases.

Authors:  Allyson A Erlendson; Michael Freitag
Journal:  Methods Mol Biol       Date:  2022

6.  Redundant enhancers in the iab-5 domain cooperatively activate Abd-B in the A5 and A6 abdominal segments of Drosophila.

Authors:  Nikolay Postika; Paul Schedl; Pavel Georgiev; Olga Kyrchanova
Journal:  Development       Date:  2021-09-24       Impact factor: 6.862

Review 7.  Maternal H3K27me3-dependent autosomal and X chromosome imprinting.

Authors:  Zhiyuan Chen; Yi Zhang
Journal:  Nat Rev Genet       Date:  2020-06-08       Impact factor: 53.242

8.  Differentiating Drosophila female germ cells initiate Polycomb silencing by regulating PRC2-interacting proteins.

Authors:  Steven Z DeLuca; Megha Ghildiyal; Liang-Yu Pang; Allan C Spradling
Journal:  Elife       Date:  2020-08-10       Impact factor: 8.140

9.  Boundaries potentiate polycomb response element-mediated silencing.

Authors:  Maksim Erokhin; Fedor Gorbenko; Dmitry Lomaev; Marina Yu Mazina; Anna Mikhailova; Azat K Garaev; Aleksander Parshikov; Nadezhda E Vorobyeva; Pavel Georgiev; Paul Schedl; Darya Chetverina
Journal:  BMC Biol       Date:  2021-06-02       Impact factor: 7.431

10.  Polycomb-group recruitment to a Drosophila target gene is the default state that is inhibited by a transcriptional activator.

Authors:  Elnaz Ghotbi; Piao Ye; Taylor Ervin; Anni Kum; Judith Benes; Richard S Jones
Journal:  Sci Adv       Date:  2021-07-16       Impact factor: 14.136

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.