Literature DB >> 30442764

Structure of human TFIID and mechanism of TBP loading onto promoter DNA.

Avinash B Patel1,2, Robert K Louder1,2, Basil J Greber2,3, Sebastian Grünberg4, Jie Luo5, Jie Fang6, Yutong Liu7, Jeff Ranish5, Steve Hahn4, Eva Nogales8,2,6,9.   

Abstract

The general transcription factor IID (TFIID) is a critical component of the eukaryotic transcription preinitiation complex (PIC) and is responsible for recognizing the core promoter DNA and initiating PIC assembly. We used cryo-electron microscopy, chemical cross-linking mass spectrometry, and biochemical reconstitution to determine the complete molecular architecture of TFIID and define the conformational landscape of TFIID in the process of TATA box-binding protein (TBP) loading onto promoter DNA. Our structural analysis revealed five structural states of TFIID in the presence of TFIIA and promoter DNA, showing that the initial binding of TFIID to the downstream promoter positions the upstream DNA and facilitates scanning of TBP for a TATA box and the subsequent engagement of the promoter. Our findings provide a mechanistic model for the specific loading of TBP by TFIID onto the promoter.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 30442764      PMCID: PMC6446905          DOI: 10.1126/science.aau8872

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  70 in total

1.  TFIIA-TAF regulatory interplay: NMR evidence for overlapping binding sites on TBP.

Authors:  S Bagby; T K Mal; D Liu; E Raddatz; Y Nakatani; M Ikura
Journal:  FEBS Lett       Date:  2000-02-25       Impact factor: 4.124

2.  Structure and function of a human TAFII250 double bromodomain module.

Authors:  R H Jacobson; A G Ladurner; D S King; R Tjian
Journal:  Science       Date:  2000-05-26       Impact factor: 47.728

3.  Inhibition of TATA-binding protein function by SAGA subunits Spt3 and Spt8 at Gcn4-activated promoters.

Authors:  R Belotserkovskaya; D E Sterner; M Deng; M H Sayre; P M Lieberman; S L Berger
Journal:  Mol Cell Biol       Date:  2000-01       Impact factor: 4.272

4.  A transcription reinitiation intermediate that is stabilized by activator.

Authors:  N Yudkovsky; J A Ranish; S Hahn
Journal:  Nature       Date:  2000-11-09       Impact factor: 49.962

5.  A unified nomenclature for TATA box binding protein (TBP)-associated factors (TAFs) involved in RNA polymerase II transcription.

Authors:  Làszlò Tora
Journal:  Genes Dev       Date:  2002-03-15       Impact factor: 11.361

6.  Mapping histone fold TAFs within yeast TFIID.

Authors:  Claire Leurent; Steven Sanders; Christine Ruhlmann; Véronique Mallouh; P Anthony Weil; Doris B Kirschner; Laszlo Tora; Patrick Schultz
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

7.  A histone fold TAF octamer within the yeast TFIID transcriptional coactivator.

Authors:  W Selleck; R Howley; Q Fang; V Podolny; M G Fried; S Buratowski; S Tan
Journal:  Nat Struct Biol       Date:  2001-08

8.  Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo.

Authors:  E Martinez; V B Palhan; A Tjernberg; E S Lymar; A M Gamper; T K Kundu; B T Chait; R G Roeder
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

9.  The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.

Authors:  E Larschan; F Winston
Journal:  Genes Dev       Date:  2001-08-01       Impact factor: 11.361

10.  Molecular characterization of Saccharomyces cerevisiae TFIID.

Authors:  Steven L Sanders; Krassimira A Garbett; P Anthony Weil
Journal:  Mol Cell Biol       Date:  2002-08       Impact factor: 4.272

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  44 in total

1.  What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models.

Authors:  Michael A Cianfrocco; Elizabeth H Kellogg
Journal:  J Chem Inf Model       Date:  2020-03-09       Impact factor: 4.956

Review 2.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

3.  IID in 3D: Improved Resolution of Transcription Factor Structure by Cryo-Electron Microscopy.

Authors:  Jordan T Feigerle; Roger D Kornberg
Journal:  Biochemistry       Date:  2019-05-31       Impact factor: 3.162

4.  Sensitive Oligodeoxynucleotide Synthesis Using Dim and Dmoc as Protecting Groups.

Authors:  Shahien Shahsavari; Dhananjani N A M Eriyagama; Jinsen Chen; Bhaskar Halami; Yipeng Yin; Komal Chillar; Shiyue Fang
Journal:  J Org Chem       Date:  2019-09-27       Impact factor: 4.354

Review 5.  High-resolution cryo-EM structures of TFIIH and their functional implications.

Authors:  Eva Nogales; Basil J Greber
Journal:  Curr Opin Struct Biol       Date:  2019-10-07       Impact factor: 6.809

6.  Two roles for the yeast transcription coactivator SAGA and a set of genes redundantly regulated by TFIID and SAGA.

Authors:  Rafal Donczew; Linda Warfield; Derek Pacheco; Ariel Erijman; Steven Hahn
Journal:  Elife       Date:  2020-01-08       Impact factor: 8.140

7.  Kin28 depletion increases association of TFIID subunits Taf1 and Taf4 with promoters in Saccharomyces cerevisiae.

Authors:  Elisabeth R Knoll; Z Iris Zhu; Debasish Sarkar; David Landsman; Randall H Morse
Journal:  Nucleic Acids Res       Date:  2020-05-07       Impact factor: 16.971

8.  TFIID Enables RNA Polymerase II Promoter-Proximal Pausing.

Authors:  Charli B Fant; Cecilia B Levandowski; Kapil Gupta; Zachary L Maas; John Moir; Jonathan D Rubin; Andrew Sawyer; Meagan N Esbin; Jenna K Rimel; Olivia Luyties; Michael T Marr; Imre Berger; Robin D Dowell; Dylan J Taatjes
Journal:  Mol Cell       Date:  2020-03-30       Impact factor: 17.970

Review 9.  A 50 year history of technologies that drove discovery in eukaryotic transcription regulation.

Authors:  John T Lis
Journal:  Nat Struct Mol Biol       Date:  2019-08-22       Impact factor: 15.369

Review 10.  50+ years of eukaryotic transcription: an expanding universe of factors and mechanisms.

Authors:  Robert G Roeder
Journal:  Nat Struct Mol Biol       Date:  2019-08-22       Impact factor: 15.369

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