Literature DB >> 31439941

50+ years of eukaryotic transcription: an expanding universe of factors and mechanisms.

Robert G Roeder1.   

Abstract

The landmark 1969 discovery of nuclear RNA polymerases I, II and III in diverse eukaryotes represented a major turning point in the field that, with subsequent elucidation of the distinct structures and functions of these enzymes, catalyzed an avalanche of further studies. In this Review, written from a personal and historical perspective, I highlight foundational biochemical studies that led to the discovery of an expanding universe of the components of the transcriptional and regulatory machineries, and a parallel complexity in gene-specific mechanisms that continue to be explored to the present day.

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Year:  2019        PMID: 31439941      PMCID: PMC6867066          DOI: 10.1038/s41594-019-0287-x

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  153 in total

1.  EVIDENCE FOR TWO DNA-DEPENDENT RNA POLYMERASE ACTIVITIES IN ISOLATED RAT-LIVER NUCLEI.

Authors:  C C WIDNELL; J R TATA
Journal:  Biochim Biophys Acta       Date:  1964-07-22

2.  Genetic regulatory mechanisms in the synthesis of proteins.

Authors:  F JACOB; J MONOD
Journal:  J Mol Biol       Date:  1961-06       Impact factor: 5.469

3.  Distinct molecular structures of nuclear class I, II, and III DNA-dependent RNA polymerases.

Authors:  V E Sklar; L B Schwartz; R G Roeder
Journal:  Proc Natl Acad Sci U S A       Date:  1975-01       Impact factor: 11.205

4.  ENZYMATIC INCORPORATION OF RIBONUCLEOSIDE TRIPHOSPHATES INTO THE INTERPOLYNUCLEOTIDE LINKAGES OF RIBONUCLEIC ACID.

Authors:  S B Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  1960-08       Impact factor: 11.205

5.  The discovery of RNA polymerase.

Authors:  Jerard Hurwitz
Journal:  J Biol Chem       Date:  2005-10-17       Impact factor: 5.157

6.  Alpha-amanitin: a specific inhibitor of one of two DNA-pendent RNA polymerase activities from calf thymus.

Authors:  C Kedinger; M Gniazdowski; J L Mandel; F Gissinger; P Chambon
Journal:  Biochem Biophys Res Commun       Date:  1970-01-06       Impact factor: 3.575

7.  Specific inhibition of nuclear RNA polymerase II by alpha-amanitin.

Authors:  T J Lindell; F Weinberg; P W Morris; R G Roeder; W J Rutter
Journal:  Science       Date:  1970-10-23       Impact factor: 47.728

8.  Factor stimulating transcription by RNA polymerase.

Authors:  R R Burgess; A A Travers; J J Dunn; E K Bautz
Journal:  Nature       Date:  1969-01-04       Impact factor: 49.962

9.  Multiple forms of DNA-dependent RNA polymerase in eukaryotic organisms.

Authors:  R G Roeder; W J Rutter
Journal:  Nature       Date:  1969-10-18       Impact factor: 49.962

10.  Specific nucleolar and nucleoplasmic RNA polymerases.

Authors:  R G Roeder; W J Rutter
Journal:  Proc Natl Acad Sci U S A       Date:  1970-03       Impact factor: 11.205

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  45 in total

1.  Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions.

Authors:  Julia V DiFiore; Travis S Ptacek; Yi Wang; Bing Li; Jeremy M Simon; Brian D Strahl
Journal:  Cell Rep       Date:  2020-06-09       Impact factor: 9.423

2.  Chemotherapy-induced S100A10 recruits KDM6A to facilitate OCT4-mediated breast cancer stemness.

Authors:  Haiquan Lu; Yangyiran Xie; Linh Tran; Jie Lan; Yongkang Yang; Naveena L Murugan; Ru Wang; Yueyang J Wang; Gregg L Semenza
Journal:  J Clin Invest       Date:  2020-09-01       Impact factor: 14.808

Review 3.  Biomolecular Condensates in the Nucleus.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Richard A Young
Journal:  Trends Biochem Sci       Date:  2020-07-17       Impact factor: 13.807

Review 4.  Compendium of human transcription factor effector domains.

Authors:  Luis F Soto; Zhaorong Li; Clarissa S Santoso; Anna Berenson; Isabella Ho; Vivian X Shen; Samson Yuan; Juan I Fuxman Bass
Journal:  Mol Cell       Date:  2021-12-03       Impact factor: 17.970

5.  Ssl2/TFIIH function in transcription start site scanning by RNA polymerase II in Saccharomyces cerevisiae.

Authors:  Tingting Zhao; Irina O Vvedenskaya; William Km Lai; Shrabani Basu; B Franklin Pugh; Bryce E Nickels; Craig D Kaplan
Journal:  Elife       Date:  2021-10-15       Impact factor: 8.140

6.  Karyopherin Kap114p-mediated trans-repression controls ribosomal gene expression under saline stress.

Authors:  Chung-Chi Liao; Sahana Shankar; Wen-Chieh Pi; Chih-Chia Chang; Golam Rizvee Ahmed; Wei-Yi Chen; Kuo-Chiang Hsia
Journal:  EMBO Rep       Date:  2020-06-02       Impact factor: 8.807

7.  Structures and implications of TBP-nucleosome complexes.

Authors:  Haibo Wang; Le Xiong; Patrick Cramer
Journal:  Proc Natl Acad Sci U S A       Date:  2021-07-27       Impact factor: 11.205

8.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

Review 9.  Regulation of RNA Polymerase II Transcription Initiation and Elongation by Transcription Factor TFII-I.

Authors:  Niko Linzer; Alexis Trumbull; Rukiye Nar; Matthew D Gibbons; David T Yu; John Strouboulis; Jörg Bungert
Journal:  Front Mol Biosci       Date:  2021-05-13

Review 10.  Regulation of Eukaryotic RNAPs Activities by Phosphorylation.

Authors:  Araceli González-Jiménez; Adrián Campos; Francisco Navarro; Andrés Clemente-Blanco; Olga Calvo
Journal:  Front Mol Biosci       Date:  2021-06-25
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