Literature DB >> 30428344

A Lamina-Associated Domain Border Governs Nuclear Lamina Interactions, Transcription, and Recombination of the Tcrb Locus.

Shiwei Chen1, Teresa Romeo Luperchio2, Xianrong Wong2, Europe B Doan1, Aaron T Byrd1, Kingshuk Roy Choudhury3, Karen L Reddy2, Michael S Krangel4.   

Abstract

Tcrb locus V(D)J recombination is regulated by positioning at the nuclear periphery. Here, we used DamID to profile Tcrb locus interactions with the nuclear lamina at high resolution. We identified a lamina-associated domain (LAD) border composed of several CTCF-binding elements that segregates active non-LAD from inactive LAD regions of the locus. Deletion of the LAD border causes an enhancer-dependent spread of histone H3 lysine 27 acetylation from the active recombination center into recombination center-proximal LAD chromatin. This is associated with a disruption to nuclear lamina association, increased chromatin looping to the recombination center, and increased transcription and recombination of recombination center-proximal gene segments. Our results show that a LAD and LAD border are critical components of Tcrb locus gene regulation and suggest that LAD borders may generally function to constrain the activity of nearby enhancers.
Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Entities:  

Keywords:  CTCF; DamID; LAD border; T cell receptor β; Tcrb; V(D)J recombination; lamina-associated domain; nuclear lamina

Year:  2018        PMID: 30428344      PMCID: PMC6287930          DOI: 10.1016/j.celrep.2018.10.052

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


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