| Literature DB >> 30424574 |
Kálmán Tompa1, Mónika Bokor2, Péter Tompa3,4.
Abstract
Here we present a novel method for the characterization of the hydration of protein solutions based on measuring and evaluating two-component wide-line ¹H NMR signals. We also provide a description of key elements of the procedure conceived for the thermodynamic interpretation of such results. These interdependent experimental and theoretical treatments provide direct experimental insight into the potential energy surface of proteins. The utility of our approach is demonstrated through the examples of two proteins of distinct structural classes: the globular, structured ubiquitin; and the intrinsically disordered ERD10 (early response to dehydration 10). We provide a detailed analysis and interpretation of data recorded earlier by cooling and slowly warming the protein solutions through thermal equilibrium states. We introduce and use order parameters that can be thus derived to characterize the distribution of potential energy barriers inhibiting the movement of water molecules bound to the surface of the protein. Our results enable a quantitative description of the ratio of ordered and disordered parts of proteins, and of the energy relations of protein⁻water bonds in aqueous solutions of the proteins.Entities:
Keywords: hydration; protein; wide-line 1H NMR
Mesh:
Substances:
Year: 2018 PMID: 30424574 PMCID: PMC6274677 DOI: 10.3390/ijms19113571
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Free induction decay (FID, panel (a)) and spectrum (panel (b)) of a motionally two-state spin system. (We focus on the slow component of the FID, the initial part of which is lost in the dead time of the spectrometer, marked by dashed line, and can be disregarded).
Figure 2“Old fashioned” melting diagrams, i.e., the total number of mobile water molecules (through protons) normalized to the total number of water molecules, as a function of temperature (blue squares: bulk water, green circles: ubiquitin, red stars: ERD10 proteins in aqueous solutions). The data are given for 50 mg/mL protein concentration.
Figure 3(a) Melting diagram (MD, green circles) of ubiquitin dissolved in double distilled water and that of frozen water under identical conditions (blue squares). (b) DMD curves (that is, the potential barrier distribution of protein–water bonds). There is no reliable measured data in the range −1–0 °C (0.995–1.00 Tfn). The data are given for 50 mg/mL protein concentration.
Figure 4(a) The melting diagram (MD, red stars) of ERD10 dissolved in double-distilled water and the melting curve (blue squares) of the solvent (water). (b) DMD curves are shown (that is, the potential barrier distribution of protein–water bonds). There is no reliable measured data in the range −1–0 °C (0.995–1.00 Tfn). The data are given for 50 mg/mL protein concentration.
Characteristic thermal quantities for two sample proteins. Tfno end Tfne give the start and the end points of the plateau in MDs, respectively, as normalized fundamental temperature. nho and nhe values are given as the mobile hydration water fraction and as the number of mobile hydration water per protein molecule. HeR, HeRn, and HeM are dynamic parameters describing heterogeneity from various aspects (see text).
| Protein |
|
|
|
| |||
|---|---|---|---|---|---|---|---|
| UBQ | 0.832 (4) | 0.961 (5) | 0.23 (2) | 0.019 (1) | >0.009 (3) | 0.3 (1) | 241 (147) |
| ERD10 | 0.835 (3) | 0.889(2) | 0.73 (4) | 0.0157 (4) | >0.098 (8) | 0.9 (1) | 415 (60) |
* The number in parentheses is the measurement error in the order of magnitude of the last number; the heterogeneity ratio is defined by the relation (4) or (6); ** Lower limit estimate due to the uncertainty of measured data is close to Tfn = 1; at Tfno value given in Table 1 (−43 °C), the excitation energy is 5.06 (4) kJ/mol for both proteins; at Tfne for ubiquitin, the excitation energy is 5.798 (2) kJ/mol at −9.9 °C; and for ERD10, it is 5.31 (3) kJ/mol at −36 °C.