Literature DB >> 22067166

Distinct hydration properties of wild-type and familial point mutant A53T of α-synuclein associated with Parkinson's disease.

E Hazy1, M Bokor, L Kalmar, A Gelencser, P Kamasa, K-H Han, K Tompa, P Tompa.   

Abstract

The propensity of α-synuclein to form amyloid plays an important role in Parkinson's disease. Three familial mutations, A30P, E46K, and A53T, correlate with Parkinson's disease. Therefore, unraveling the structural effects of these mutations has basic implications in understanding the molecular basis of the disease. Here, we address this issue through comparing details of the hydration of wild-type α-synuclein and its A53T mutant by a combination of wide-line NMR, differential scanning calorimetry, and molecular dynamics simulations. All three approaches suggest a hydrate shell compatible with a largely disordered state of both proteins. Its fine details, however, are different, with the mutant displaying a somewhat higher level of hydration, suggesting a bias to more open structures, favorable for protein-protein interactions leading to amyloid formation. These differences disappear in the amyloid state, suggesting basically the same surface topology, irrespective of the initial monomeric state.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 22067166      PMCID: PMC3207174          DOI: 10.1016/j.bpj.2011.08.052

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  41 in total

1.  Hydration from hydrodynamics. General considerations and applications of bead modelling to globular proteins.

Authors:  J García de la Torre
Journal:  Biophys Chem       Date:  2001-11-28       Impact factor: 2.352

2.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

3.  Fibrils formed in vitro from alpha-synuclein and two mutant forms linked to Parkinson's disease are typical amyloid.

Authors:  K A Conway; J D Harper; P T Lansbury
Journal:  Biochemistry       Date:  2000-03-14       Impact factor: 3.162

4.  Effects of the mutations Ala30 to Pro and Ala53 to Thr on the physical and morphological properties of alpha-synuclein protein implicated in Parkinson's disease.

Authors:  O M El-Agnaf; R Jakes; M D Curran; A Wallace
Journal:  FEBS Lett       Date:  1998-11-27       Impact factor: 4.124

5.  Synuclein: a neuron-specific protein localized to the nucleus and presynaptic nerve terminal.

Authors:  L Maroteaux; J T Campanelli; R H Scheller
Journal:  J Neurosci       Date:  1988-08       Impact factor: 6.167

6.  Residual structure and dynamics in Parkinson's disease-associated mutants of alpha-synuclein.

Authors:  R Bussell; D Eliezer
Journal:  J Biol Chem       Date:  2001-10-04       Impact factor: 5.157

7.  Effect of familial Parkinson's disease point mutations A30P and A53T on the structural properties, aggregation, and fibrillation of human alpha-synuclein.

Authors:  J Li; V N Uversky; A L Fink
Journal:  Biochemistry       Date:  2001-09-25       Impact factor: 3.162

8.  Conformational behavior of human alpha-synuclein is modulated by familial Parkinson's disease point mutations A30P and A53T.

Authors:  Jie Li; Vladimir N Uversky; Anthony L Fink
Journal:  Neurotoxicology       Date:  2002-10       Impact factor: 4.294

9.  A broken alpha -helix in folded alpha -Synuclein.

Authors:  Sreeganga Chandra; Xiaocheng Chen; Josep Rizo; Reinhard Jahn; Thomas C Südhof
Journal:  J Biol Chem       Date:  2003-02-13       Impact factor: 5.157

10.  The new mutation, E46K, of alpha-synuclein causes Parkinson and Lewy body dementia.

Authors:  Juan J Zarranz; Javier Alegre; Juan C Gómez-Esteban; Elena Lezcano; Raquel Ros; Israel Ampuero; Lídice Vidal; Janet Hoenicka; Olga Rodriguez; Begoña Atarés; Verónica Llorens; Estrella Gomez Tortosa; Teodoro del Ser; David G Muñoz; Justo G de Yebenes
Journal:  Ann Neurol       Date:  2004-02       Impact factor: 10.422

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  17 in total

Review 1.  Insights into the Molecular Mechanisms of Alzheimer's and Parkinson's Diseases with Molecular Simulations: Understanding the Roles of Artificial and Pathological Missense Mutations in Intrinsically Disordered Proteins Related to Pathology.

Authors:  Orkid Coskuner-Weber; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2018-01-24       Impact factor: 5.923

2.  Exploration of Protein Aggregations in Parkinson's Disease Through Computational Approaches and Big Data Analytics.

Authors:  Saba Shahzadi; Muhammad Yasir; Bisma Aftab; Sumbal Babar; Mubashir Hassan
Journal:  Methods Mol Biol       Date:  2022

3.  Using Molecular Simulation to Guide Protein Engineering for Biocatalysis in Organic Solvents.

Authors:  Haiyang Cui; Markus Vedder; Ulrich Schwaneberg; Mehdi D Davari
Journal:  Methods Mol Biol       Date:  2022

4.  Structures and free energy landscapes of the A53T mutant-type α-synuclein protein and impact of A53T mutation on the structures of the wild-type α-synuclein protein with dynamics.

Authors:  Orkid Coskuner; Olivia Wise-Scira
Journal:  ACS Chem Neurosci       Date:  2013-05-17       Impact factor: 4.418

Review 5.  Computational approaches to understanding protein aggregation in neurodegeneration.

Authors:  Rachel L Redler; David Shirvanyants; Onur Dagliyan; Feng Ding; Doo Nam Kim; Pradeep Kota; Elizabeth A Proctor; Srinivas Ramachandran; Arpit Tandon; Nikolay V Dokholyan
Journal:  J Mol Cell Biol       Date:  2014-03-11       Impact factor: 6.216

6.  The hydrophobic temperature dependence of amino acids directly calculated from protein structures.

Authors:  Erik van Dijk; Arlo Hoogeveen; Sanne Abeln
Journal:  PLoS Comput Biol       Date:  2015-05-22       Impact factor: 4.475

Review 7.  Fairy "tails": flexibility and function of intrinsically disordered extensions in the photosynthetic world.

Authors:  Gabriel Thieulin-Pardo; Luisana Avilan; Mila Kojadinovic; Brigitte Gontero
Journal:  Front Mol Biosci       Date:  2015-05-19

8.  Comparison of structure determination methods for intrinsically disordered amyloid-β peptides.

Authors:  K Aurelia Ball; David E Wemmer; Teresa Head-Gordon
Journal:  J Phys Chem B       Date:  2014-01-28       Impact factor: 2.991

9.  Wildtype and A30P mutant alpha-synuclein form different fibril structures.

Authors:  Søren Bang Nielsen; Francesca Macchi; Samuele Raccosta; Annette Eva Langkilde; Lise Giehm; Anders Kyrsting; Anna Sigrid Pii Svane; Mauro Manno; Gunna Christiansen; Niels Christian Nielsen; Lene Oddershede; Bente Vestergaard; Daniel Erik Otzen
Journal:  PLoS One       Date:  2013-07-04       Impact factor: 3.240

10.  Water molecular system dynamics associated with amyloidogenic nucleation as revealed by real time near infrared spectroscopy and aquaphotomics.

Authors:  Eri Chatani; Yutaro Tsuchisaka; Yuki Masuda; Roumiana Tsenkova
Journal:  PLoS One       Date:  2014-07-11       Impact factor: 3.240

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