Literature DB >> 30412198

Proteomics goes parallel.

Ben C Collins1, Ruedi Aebersold1,2.   

Abstract

Year:  2018        PMID： 30412198     DOI： 10.1038/nbt.4288

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  8 in total

1.  Shotgun collision-induced dissociation of peptides using a time of flight mass analyzer.

Authors:  Samuel Purvine; Jason-Thomas Eppel; Eugene C Yi; David R Goodlett
Journal:  Proteomics       Date:  2003-06       Impact factor: 3.984

2.  Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis.

Authors:  Ludovic C Gillet; Pedro Navarro; Stephen Tate; Hannes Röst; Nathalie Selevsek; Lukas Reiter; Ron Bonner; Ruedi Aebersold
Journal:  Mol Cell Proteomics       Date:  2012-01-18       Impact factor: 5.911

3.  Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra.

Authors:  John D Venable; Meng-Qiu Dong; James Wohlschlegel; Andrew Dillin; John R Yates
Journal:  Nat Methods       Date:  2004-09-29       Impact factor: 28.547

Review 4.  The Utility of Nanopore Technology for Protein and Peptide Sensing.

Authors:  Joseph W F Robertson; Joseph E Reiner
Journal:  Proteomics       Date:  2018-08-05       Impact factor: 3.984

Review 5.  On the Dependency of Cellular Protein Levels on mRNA Abundance.

Authors:  Yansheng Liu; Andreas Beyer; Ruedi Aebersold
Journal:  Cell       Date:  2016-04-21       Impact factor: 41.582

Review 6.  Progress in Top-Down Proteomics and the Analysis of Proteoforms.

Authors:  Timothy K Toby; Luca Fornelli; Neil L Kelleher
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2016-06-12       Impact factor: 10.745

Review 7.  Coming of age: ten years of next-generation sequencing technologies.

Authors:  Sara Goodwin; John D McPherson; W Richard McCombie
Journal:  Nat Rev Genet       Date:  2016-05-17       Impact factor: 53.242

Review 8.  Mass-spectrometric exploration of proteome structure and function.

Authors:  Ruedi Aebersold; Matthias Mann
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962
  8 in total
  5 in total

1.  The Human Immunopeptidome Project: A Roadmap to Predict and Treat Immune Diseases.

Authors:  Juan Antonio Vizcaíno; Peter Kubiniok; Kevin A Kovalchik; Qing Ma; Jérôme D Duquette; Ian Mongrain; Eric W Deutsch; Bjoern Peters; Alessandro Sette; Isabelle Sirois; Etienne Caron
Journal:  Mol Cell Proteomics       Date:  2019-11-19       Impact factor: 5.911

Review 2.  New avenues for systematically inferring cell-cell communication: through single-cell transcriptomics data.

Authors:  Xin Shao; Xiaoyan Lu; Jie Liao; Huajun Chen; Xiaohui Fan
Journal:  Protein Cell       Date:  2020-05-21       Impact factor: 14.870

3.  Machine learning-aided protein identification from multidimensional signatures.

Authors:  Yuewen Zhang; Maya A Wright; Kadi L Saar; Pavankumar Challa; Alexey S Morgunov; Quentin A E Peter; Sean Devenish; Christopher M Dobson; Tuomas P J Knowles
Journal:  Lab Chip       Date:  2021-06-10       Impact factor: 6.799

Review 4.  Beyond mass spectrometry, the next step in proteomics.

Authors:  Winston Timp; Gregory Timp
Journal:  Sci Adv       Date:  2020-01-10       Impact factor: 14.136

5.  Using Deep Learning to Extrapolate Protein Expression Measurements.

Authors:  Mitra Parissa Barzine; Karlis Freivalds; James C Wright; Mārtiņš Opmanis; Darta Rituma; Fatemeh Zamanzad Ghavidel; Andrew F Jarnuczak; Edgars Celms; Kārlis Čerāns; Inge Jonassen; Lelde Lace; Juan Antonio Vizcaíno; Jyoti Sharma Choudhary; Alvis Brazma; Juris Viksna
Journal:  Proteomics       Date:  2020-10-16       Impact factor: 3.984
  5 in total

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