Literature DB >> 30409024

Considerations When Designing a Microbiome Study: Implications for Nursing Science.

Katherine A Maki1, Ana F Diallo2, Mark B Lockwood1, Alexis T Franks3, Stefan J Green4, Paule V Joseph3.   

Abstract

Nurse scientists play an important role in studying complex relationships among human genetics, environmental factors, and the microbiome, all of which can contribute to human health and disease. Therefore, it is essential that they have the tools necessary to execute a successful microbiome research study. The purpose of this article is to highlight important methodological factors for nurse scientists to consider when designing a microbiome study. In addition to considering factors that influence host-associated microbiomes (i.e., microorganisms associated with organisms such as humans, mice, and rats), this manuscript highlights study designs and methods for microbiome analysis. Exemplars are presented from nurse scientists who have incorporated microbiome methods into their program of research. This review is intended to be a resource to guide nursing-focused microbiome research and highlights how study of the microbiome can be incorporated to answer research questions.

Entities:  

Keywords:  genetics; microbiome; research methods

Mesh:

Year:  2018        PMID: 30409024      PMCID: PMC6700895          DOI: 10.1177/1099800418811639

Source DB:  PubMed          Journal:  Biol Res Nurs        ISSN: 1099-8004            Impact factor:   2.522


  117 in total

Review 1.  The species concept for prokaryotes.

Authors:  R Rosselló-Mora; R Amann
Journal:  FEMS Microbiol Rev       Date:  2001-01       Impact factor: 16.408

2.  Gene sequences useful for predicting relatedness of whole genomes in bacteria.

Authors:  Daniel R Zeigler
Journal:  Int J Syst Evol Microbiol       Date:  2003-11       Impact factor: 2.747

3.  Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization.

Authors:  Miguel Angel Reyes-López; Alfonso Méndez-Tenorio; Rogelio Maldonado-Rodríguez; Mitchel J Doktycz; James T Fleming; Kenneth L Beattie
Journal:  Nucleic Acids Res       Date:  2003-01-15       Impact factor: 16.971

Review 4.  Horizontal gene transfer: a critical view.

Authors:  C G Kurland; B Canback; Otto G Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

5.  Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB.

Authors:  T Z DeSantis; P Hugenholtz; N Larsen; M Rojas; E L Brodie; K Keller; T Huber; D Dalevi; P Hu; G L Andersen
Journal:  Appl Environ Microbiol       Date:  2006-07       Impact factor: 4.792

Review 6.  Mass spectrometry-based metabolomics.

Authors:  Katja Dettmer; Pavel A Aronov; Bruce D Hammock
Journal:  Mass Spectrom Rev       Date:  2007 Jan-Feb       Impact factor: 10.946

Review 7.  16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls.

Authors:  J Michael Janda; Sharon L Abbott
Journal:  J Clin Microbiol       Date:  2007-07-11       Impact factor: 5.948

8.  Knowledge, beliefs, and barriers relevant to colorectal cancer screening in an urban population: a pilot study.

Authors:  R L Wolf; P Zybert; C H Brouse; A I Neugut; S Shea; G Gibson; R A Lantigua; C E Basch
Journal:  Fam Community Health       Date:  2001-10

9.  Dysbiosis in inflammatory bowel disease.

Authors:  C P Tamboli; C Neut; P Desreumaux; J F Colombel
Journal:  Gut       Date:  2004-01       Impact factor: 23.059

10.  SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB.

Authors:  Elmar Pruesse; Christian Quast; Katrin Knittel; Bernhard M Fuchs; Wolfgang Ludwig; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2007-10-18       Impact factor: 16.971

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  10 in total

1.  Omics for Nurse Scientists Conducting Environmental Health Research.

Authors:  Lacey W Heinsberg; Yvette P Conley
Journal:  Annu Rev Nurs Res       Date:  2019-12-23

2.  Metabolic Profiling of Blood and Urine for Exploring the Functional Role of the Microbiota in Human Health.

Authors:  Ana F Diallo; Mark B Lockwood; Katherine A Maki; Alexis T Franks; Abhrarup Roy; Rosario Jaime-Lara; Paule V Joseph; Wendy A Henderson; Seon Yoon Chung; Jacqueline McGrath; Stefan J Green; Anne M Fink
Journal:  Biol Res Nurs       Date:  2020-07-29       Impact factor: 2.522

3.  Comparing Published Gut Microbiome Taxonomic Data Across Multinational Studies.

Authors:  Brianna K Meeks; Katherine A Maki; Nancy J Ames; Jennifer J Barb
Journal:  Nurs Res       Date:  2022 Jan-Feb 01       Impact factor: 2.381

Review 4.  Symptom Clusters in Head and Neck Cancer: A Systematic Review and Conceptual Model.

Authors:  Asha Mathew; Amit Jiwan Tirkey; Hongjin Li; Alana Steffen; Mark B Lockwood; Crystal L Patil; Ardith Z Doorenbos
Journal:  Semin Oncol Nurs       Date:  2021-09-03       Impact factor: 3.527

5.  Examining the Relationships Between Sleep Physiology and the Gut Microbiome in Preclinical and Translational Research: Protocol for a Scoping Review.

Authors:  Katherine Anne Maki; Jenna Alkhatib; Gisela Butera; Gwenyth Reid Wallen
Journal:  JMIR Res Protoc       Date:  2022-06-21

Review 6.  Patient-centred approaches for the management of unpleasant symptoms in kidney disease.

Authors:  Kamyar Kalantar-Zadeh; Mark B Lockwood; Connie M Rhee; Ekamol Tantisattamo; Sharon Andreoli; Alessandro Balducci; Paul Laffin; Tess Harris; Richard Knight; Latha Kumaraswami; Vassilios Liakopoulos; Siu-Fai Lui; Sajay Kumar; Maggie Ng; Gamal Saadi; Ifeoma Ulasi; Allison Tong; Philip Kam-Tao Li
Journal:  Nat Rev Nephrol       Date:  2022-01-03       Impact factor: 42.439

7.  Leveraging Microbiome Science From the Bedside to Bench and Back: A Nursing Perspective.

Authors:  Katherine A Maki; Paule V Joseph; Nancy J Ames; Gwenyth R Wallen
Journal:  Nurs Res       Date:  2021 Jan/Feb       Impact factor: 2.381

8.  Engaging Adolescent and Young Adults in Microbiome Sample Self-Collection: Strategies for Success.

Authors:  Chen X Chen; Janet S Carpenter; Tabitha Murphy; Patricia Brooks; J Dennis Fortenberry
Journal:  Biol Res Nurs       Date:  2020-12-09       Impact factor: 2.318

9.  Clinical care is evolving: The microbiome for advanced practice nurses.

Authors:  Mark B Lockwood; Stefan J Green
Journal:  J Am Assoc Nurse Pract       Date:  2020-04       Impact factor: 1.495

Review 10.  The Oral and Gut Bacterial Microbiomes: Similarities, Differences, and Connections.

Authors:  Katherine A Maki; Narjis Kazmi; Jennifer J Barb; Nancy Ames
Journal:  Biol Res Nurs       Date:  2020-07-21       Impact factor: 2.522

  10 in total

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