Literature DB >> 17626177

16S rRNA gene sequencing for bacterial identification in the diagnostic laboratory: pluses, perils, and pitfalls.

J Michael Janda1, Sharon L Abbott.   

Abstract

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Year:  2007        PMID： 17626177      PMCID： PMC2045242          DOI： 10.1128/JCM.01228-07

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


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  16 in total

1.  Usefulness of the MicroSeq 500 16S ribosomal DNA-based bacterial identification system for identification of clinically significant bacterial isolates with ambiguous biochemical profiles.

Authors:  Patrick C Y Woo; Kenneth H L Ng; Susanna K P Lau; Kam-tong Yip; Ami M Y Fung; Kit-wah Leung; Dorothy M W Tam; Tak-lun Que; Kwok-yung Yuen
Journal:  J Clin Microbiol       Date:  2003-05       Impact factor: 5.948

2.  How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity.

Authors:  G E Fox; J D Wisotzkey; P Jurtshuk
Journal:  Int J Syst Bacteriol       Date:  1992-01

3.  Use of the MicroSeq 500 16S rRNA gene-based sequencing for identification of bacterial isolates that commercial automated systems failed to identify correctly.

Authors:  Carla Fontana; Marco Favaro; Marco Pelliccioni; Enrico Salvatore Pistoia; Cartesio Favalli
Journal:  J Clin Microbiol       Date:  2005-02       Impact factor: 5.948

4.  Evaluation of 16S rRNA sequencing and reevaluation of a short biochemical scheme for identification of clinically significant Bacteroides species.

Authors:  Yuli Song; Chengxu Liu; Mauricio Bolanos; Julia Lee; Maureen McTeague; Sydney M Finegold
Journal:  J Clin Microbiol       Date:  2005-04       Impact factor: 5.948

5.  16S rRNA gene sequencing versus the API 20 NE system and the VITEK 2 ID-GNB card for identification of nonfermenting Gram-negative bacteria in the clinical laboratory.

Authors:  P P Bosshard; R Zbinden; S Abels; B Böddinghaus; M Altwegg; E C Böttger
Journal:  J Clin Microbiol       Date:  2006-04       Impact factor: 5.948

6.  Usefulness of the MicroSeq 500 16S rDNA bacterial identification system for identification of anaerobic Gram positive bacilli isolated from blood cultures.

Authors:  S K P Lau; K H L Ng; P C Y Woo; K-T Yip; A M Y Fung; G K S Woo; K-M Chan; T-L Que; K-Y Yuen
Journal:  J Clin Pathol       Date:  2006-02       Impact factor: 3.411

7.  16S rRNA gene sequencing and the routine clinical microbiology laboratory: a perfect marriage?

Authors:  Michael Boudewijns; Judith M Bakkers; Patrick D J Sturm; Willem J G Melchers
Journal:  J Clin Microbiol       Date:  2006-09       Impact factor: 5.948

8.  Comparison of phenotypic and genotypic techniques for identification of unusual aerobic pathogenic gram-negative bacilli.

Authors:  Y W Tang; N M Ellis; M K Hopkins; D H Smith; D E Dodge; D H Persing
Journal:  J Clin Microbiol       Date:  1998-12       Impact factor: 5.948

9.  Comparison of genotypic and phenotypic methods for species-level identification of clinical isolates of coagulase-negative staphylococci.

Authors:  E Heikens; A Fleer; A Paauw; A Florijn; A C Fluit
Journal:  J Clin Microbiol       Date:  2005-05       Impact factor: 5.948

10.  At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792
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  422 in total

1.  Low-diversity bacterial community in the gut of the fruitfly Drosophila melanogaster.

Authors:  Chun Nin Adam Wong; Patrick Ng; Angela E Douglas
Journal:  Environ Microbiol       Date:  2011-06-01       Impact factor: 5.491

2.  Molecular testing for infectious diseases should be done in the clinical microbiology laboratory.

Authors:  Nima Mosammaparast; Alexander J McAdam; Frederick S Nolte
Journal:  J Clin Microbiol       Date:  2012-03-14       Impact factor: 5.948

3.  Recognition of potentially novel human disease-associated pathogens by implementation of systematic 16S rRNA gene sequencing in the diagnostic laboratory.

Authors:  Peter M Keller; Silvana K Rampini; Andrea C Büchler; Gerhard Eich; Roger M Wanner; Roberto F Speck; Erik C Böttger; Guido V Bloemberg
Journal:  J Clin Microbiol       Date:  2010-07-14       Impact factor: 5.948

4.  Evaluation of new biomarker genes for differentiating Haemophilus influenzae from Haemophilus haemolyticus.

Authors:  M Jordan Theodore; Raydel D Anderson; Xin Wang; Lee S Katz; Jeni T Vuong; Melissa E Bell; Billie A Juni; Sara A Lowther; Ruth Lynfield; Jessica R MacNeil; Leonard W Mayer
Journal:  J Clin Microbiol       Date:  2012-02-01       Impact factor: 5.948

5.  Rothia aeria as a cause of sepsis in a native joint.

Authors:  Ayesha J Verrall; Philip C Robinson; Chor Ee Tan; W Grant Mackie; Timothy K Blackmore
Journal:  J Clin Microbiol       Date:  2010-05-26       Impact factor: 5.948

6.  Development of a new real-time PCR system for simultaneous detection of bacteria and fungi in pathological samples.

Authors:  Hitomi Fukumoto; Yuko Sato; Hideki Hasegawa; Hidehisa Saeki; Harutaka Katano
Journal:  Int J Clin Exp Pathol       Date:  2015-11-01

7.  NetCoMi: network construction and comparison for microbiome data in R.

Authors:  Stefanie Peschel; Christian L Müller; Erika von Mutius; Anne-Laure Boulesteix; Martin Depner
Journal:  Brief Bioinform       Date:  2021-07-20       Impact factor: 11.622

8.  Rapid Differentiation of Haemophilus influenzae and Haemophilus haemolyticus by Use of Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry with ClinProTools Mass Spectrum Analysis.

Authors:  Jonathan H K Chen; Vincent C C Cheng; Chun-Pong Wong; Sally C Y Wong; Wing-Cheong Yam; Kwok-Yung Yuen
Journal:  J Clin Microbiol       Date:  2017-06-21       Impact factor: 5.948

9.  Comparative genomic analysis reveals metabolic diversity of different Paenibacillus groups.

Authors:  Wen-Cong Huang; Yilun Hu; Gengxin Zhang; Meng Li
Journal:  Appl Microbiol Biotechnol       Date:  2020-10-31       Impact factor: 4.813

10.  Identification of pathogenic Nocardia species by reverse line blot hybridization targeting the 16S rRNA and 16S-23S rRNA gene spacer regions.

Authors:  Meng Xiao; Fanrong Kong; Tania C Sorrell; Yongyan Cao; Ok Cha Lee; Ying Liu; Vitali Sintchenko; Sharon C A Chen
Journal:  J Clin Microbiol       Date:  2009-12-02       Impact factor: 5.948
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