| Literature DB >> 30400339 |
Anders W Bailey1,2, Amreena Suri3,4, Pauline M Chou5,6, Tatiana Pundy7, Samantha Gadd8,9, Stacey L Raimondi10, Tadanori Tomita11,12, Simone Treiger Sredni13,14,15.
Abstract
Neuroblastoma (NB) is the most common extracranial solid tumor in pediatrics, with rare occurrences of primary and metastatic tumors in the central nervous system (CNS). We previously reported the overexpression of the polo-like kinase 4 (PLK4) in embryonal brain tumors. PLK4 has also been found to be overexpressed in a variety of peripheral adult tumors and recently in peripheral NB. Here, we investigated PLK4 expression in NBs of the CNS (CNS-NB) and validated our findings by performing a multi-platform transcriptomic meta-analysis using publicly available data. We evaluated the PLK4 expression by quantitative real-time PCR (qRT-PCR) on the CNS-NB samples and compared the relative expression levels among other embryonal and non-embryonal brain tumors. The relative PLK4 expression levels of the NB samples were found to be significantly higher than the non-embryonal brain tumors (p-value < 0.0001 in both our samples and in public databases). Here, we expand upon our previous work that detected PLK4 overexpression in pediatric embryonal tumors to include CNS-NB. As we previously reported, inhibiting PLK4 in embryonal tumors led to decreased tumor cell proliferation, survival, invasion and migration in vitro and tumor growth in vivo, and therefore PLK4 may be a potential new therapeutic approach to CNS-NB.Entities:
Keywords: ATRT; CNS-PNET; embryonal brain tumor; kinase inhibitor; low grade glioma; medulloblastoma; pediatric; rhabdoid
Year: 2018 PMID: 30400339 PMCID: PMC6315664 DOI: 10.3390/bioengineering5040096
Source DB: PubMed Journal: Bioengineering (Basel) ISSN: 2306-5354
Figure 1Primary CNS-Neuroblastoma. (A) Computerized Tomography image of a primary CNS-NB shows a large heterogeneous well-circumscribed lesion (arrows) measuring 5.7 × 5.2 × 4.8 cm, within the right thalamus (10×). (B,C). Histopathological examination shows islands of densely cellular poorly differentiated tumor cells, interspaced by sparsely cellular areas or finely fibrillary tissue. No mature neurons are identified (10× and 20× respectively). (D) Immunostain for neuron specific enolase (NSE) (20×); (E) Immunostain for synaptophysin (20×). Homer-Wright rosettes are frequent (red arrows).
Figure 2Neuroblastoma metastatic to the CNS. (A) Computerized Tomography image of a metastatic NB shows a large poorly delimited mass in the right posterior frontoparietal region of the brain (arrows). (B) Biopsy of the metastatic tumor mass shows small poorly differentiated cells with hyperchromatic nucleus and scant cytoplasm.
Figure 3qRT-PCR Expression Analysis of CNS-NB, ATRT, MB and LGG. (A–C) Relative PLK4 expression in CNS-NB, embryonal and non-embryonal pediatric brain tumors measured by qRT-PCR normalized to the endogenous controls GAPDH, HPRT and HMBS respectively, compared to LGG. (D) Relative PLK4 expression in CNS-NB when normalized to all three endogenous controls compared to LGG. (E) Relative PLK4 expression in embryonal tumors compared to non-embryonal tumors, normalized to all three endogenous controls. Fold changes and p-values were compared to non-embryonal pediatric brain tumors (unpaired t-tests, * p < 0.1, ** p < 0.01, **** p < 0.0001).
Relative PLK4 expression in NB, ATRT, MB and LGG. Relative PLK4 expression measured by qRT-PCR, calculated against 3 different endogenous controls individually and normalized together.
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| PLK4/ | 0.97 | 0.1 | 9.4 | 0.0016 | 1.88 | 0.1 | 18.14 | 0.006 |
| PLK4/ | 1.062 | 0.14 | 7.78 | <0.0001 | 1.28 | 0.14 | 9.33 | 0.0031 |
| PLK4/ | 2.62 | 0.07 | 36.41 | 0.0116 | 1.36 | 0.07 | 18.89 | 0.0116 |
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| 1.58 | 0.1 | 15.05 | <0.0001 | 1.4 | 0.1 | 13.3 | <0.0001 |
Figure 4GDC Expression Analysis of NB and LGG. (A) PLK4 expression in NB and LGG shows significant overexpression in neuroblastoma (NB) when compared with low grade gliomas (LGG) (**** p < 0.0001, unpaired t-test). (B) Relative frequency distribution of PLK4 expression among samples described in Table 2: NB (TARGET n = 153), LGG (TCGA n = 508) and 51 normal human tissue sample types (GTEx Portal). (C) Descriptive statistics of PLK4 expression in the cohort of tissue sample types (GraphPad). (D,E) The glioma markers MBP and GFAP respectively, show significant overexpression in LGG compared to NB (**** p < 0.0001, unpaired t-test). (F) The NB maker CHGA, shows overexpression in NB compared to LGG (**** p < 0.0001, unpaired t-test). All graphs were generated and statistics calculated using PRISM (GraphPad Software, Inc.).
GDC and GTEx Portal Gene Expression Data. RNAseqV2 data extracted from the GDC database (Neuroblastoma and Low Grade Glioma) and GTEx Portal (51 normal human tissue samples). Genes displayed are: PLK4 (Polo-like kinase 4), CHGA (Chromogranin A), MBP (Myelin basic protein) and GFAP (Glial fibrillary acidic protein). Expression is represented as median TPM (Transcripts per million) values.
| Organ # | Organ Name | Sample Size |
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| Neuroblastoma | 153 |
| 658.1 | 2.9 | 0.3 | |
| Low Grade Glioma | 508 | 2.2 | 45.4 | 212.4 | 8535.2 | |
| 1 | Adipose—Subcutaneous | 442 | 1.4 | 0.1 | 6.3 | 1.9 |
| 2 | Adipose—Visceral (Omentum) | 355 | 0.8 | 0.1 | 6.3 | 1.2 |
| 3 | Adrenal Gland | 190 | 0.9 | 7.5 | 1.5 | 0.8 |
| 4 | Artery—Aorta | 299 | 0.5 | 0.2 | 6.8 | 2.9 |
| 5 | Artery—Coronary | 173 | 0.8 | 0.2 | 6.5 | 2.1 |
| 6 | Artery—Tibial | 441 | 0.7 | 0.2 | 6.7 | 1.4 |
| 7 | Bladder | 11 | 1.1 | 0.6 | 7.5 | 0.4 |
| 8 | Brain—Amygdala | 100 | 0.6 | 29.2 | 905.8 | 1669.7 |
| 9 | Brain—Anterior cingulate cortex (BA24) | 121 | 0.6 | 87.7 | 302.3 | 1027.0 |
| 10 | Brain—Caudate (Basal ganglia) | 160 | 0.6 | 26.9 | 422.6 | 1577.2 |
| 11 | Brain Cerebellar Hemisphere | 136 | 0.2 | 4.8 | 208.6 | 600.3 |
| 12 | Brain—Cerebellum | 173 | 0.2 | 4.4 | 177.7 | 696.6 |
| 13 | Brain—Cortex | 158 | 0.6 | 219.6 | 267.8 | 1200.6 |
| 14 | Brain—Frontal Cortex (BA9) | 129 | 0.8 | 335.6 | 332.5 | 961.1 |
| 15 | Brain—Hippocampus | 123 | 0.4 | 40.5 | 1472.2 | 2225.0 |
| 16 | Brain—Hypothalamus | 121 | 0.7 | 79.3 | 890.0 | 3809.2 |
| 17 | Brain—Nucleus accumbens (basal ganglia) | 147 | 0.9 | 32.6 | 335.9 | 913.3 |
| 18 | Brain—Putamen (basal ganglia) | 124 | 0.5 | 23.0 | 884.8 | 985.9 |
| 19 | Brain—Spinal cord (cervical c-1) | 91 | 0.8 | 5.7 | 9405.2 | 12,714.4 |
| 20 | Brain—Substantia nigra | 88 | 0.5 | 32.2 | 2607.8 | 4370.6 |
| 21 | Breast—Mammary Tissue | 290 | 1.2 | 0.3 | 6.5 | 2.8 |
| 22 | Cervix—Ectocervix | 6 | 1.4 | 0.4 | 8.9 | 0.2 |
| 23 | Cervix—Endocervix | 5 | 1.2 | 1.6 | 11.5 | 0.5 |
| 24 | Colon—Sigmoid | 233 | 0.5 | 5.8 | 5.5 | 0.9 |
| 25 | Colon—Transverse | 274 | 1.7 | 38.4 | 5.9 | 0.5 |
| 26 | Esophagus—Gastroesophageal Junction | 244 | 0.5 | 1.9 | 6.1 | 0.8 |
| 27 | Esophagus—Mucosa | 407 | 4.5 | 0.2 | 7.1 | 0.3 |
| 28 | Esophabus—Musclaris | 370 | 0.5 | 2.2 | 5.4 | 0.6 |
| 29 | Fallopian Tube | 7 | 1.1 | 1.8 | 7.3 | 0.4 |
| 30 | Heart—Atrial Appendage | 297 | 0.2 | 0.1 | 2.8 | 2.0 |
| 31 | Heart—Left Ventricle | 303 | 0.1 | 0.1 | 2.5 | 1.4 |
| 32 | Kidney—Cortex | 45 | 0.5 | 0.4 | 5.1 | 0.6 |
| 33 | Liver | 175 | 0.2 | 0.1 | 3.6 | 0.3 |
| 34 | Lung | 427 | 1.2 | 0.3 | 9.9 | 0.9 |
| 35 | Minor Salivary Gland | 97 | 0.1 | 0.2 | 7.0 | 1.1 |
| 36 | Muscle—Skeletal | 564 | 0.1 | 0.1 | 9.8 | 0.6 |
| 37 | Nerve—Tibial | 414 | 1.2 | 0.3 | 418.9 | 13.3 |
| 38 | Ovary | 133 | 1.4 | 0.3 | 4.9 | 0.6 |
| 39 | Pancreas | 248 | 0.3 | 42.3 | 3.4 | 0.5 |
| 40 | Pituitary | 183 | 0.4 | 781.6 | 7.6 | 16.3 |
| 41 | Prostate | 152 | 0.9 | 7.7 | 6.2 | 0.8 |
| 42 | Skin—Not Sun Exposed (Suprapubic) | 387 | 2.7 | 0.4 | 9.9 | 0.9 |
| 45 | Skin—Sun Exposed (Lower Leg) | 473 | 2.7 | 0.4 | 9.5 | 1.0 |
| 43 | Small Intestine—Terminal Ileum | 137 | 2.0 | 86.5 | 8.1 | 0.4 |
| 44 | Spleen | 162 | 2.1 | 0.2 | 11.3 | 0.5 |
| 46 | Stomach | 262 | 0.7 | 226.5 | 5.3 | 0.4 |
| 47 | Testis | 259 |
| 158.6 | 3.3 | 1.5 |
| 48 | Thyroid | 446 | 1.0 | 0.3 | 9.4 | 1.4 |
| 49 | Uterus | 111 | 1.1 | 0.3 | 7.8 | 0.4 |
| 50 | Vagina | 115 | 2.3 | 0.6 | 7.9 | 0.6 |
| 51 | Whole Blood | 407 | 0.3 | 0.2 | 18.3 | 1.0 |
Expression of PLK4, CHGA, MBP and GFAP obtained from the GDC. Genes displayed are: PLK4 (polo-like kinase 4), CHGA (chromogranin A), MBP (myelin basic protein) and GFAP (glial fibrillary acidic protein). Expression is represented as average TPM (Transcripts per million) values. Statistics were calculated in PRISM (unpaired t-test; p < 0.0001).
| Neuroblastoma | Low Grade Glioma | Fold Change | ||
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| 14.92 | 3.49 | 4.28 | |
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| 879.97 | 75.63 | 11.63 | |
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| 5.26 | 411.70 | −78.32 | |
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| 1.68 | 11,046.77 | −6578.74 |