| Literature DB >> 30379951 |
Wei Wang1, Dayan Zhang1, Huan Wen1, Qihao Wang1, Cheng Peng1, Jihai Gao1.
Abstract
Aconitum carmichaelii, commonly known as Fuzi, is a typical traditional Chinese medicine (TCM) herb that has been grown for more than one thousand years in China. Although root rot disease has been seriously threatening this crop in recent years, few studies have investigated root rot disease in Fuzi, and no pathogens have been identified. In this study, fungal libraries from rhizosphere soils were constructed by internal transcribed spacer (ITS) sequencing using the HiSeq 2500 high-throughput platform. A total of 948,843 tags were obtained from 17 soil samples, and these corresponded to 195,583,495 nt. At 97% identity, the libraries yielded 12,266 operational taxonomic units (OTUs), of which 97.5% could be annotated. In sick soils, Athelia, Mucor and Mortierella were the dominant fungi, comprising 10.3%, 10.1% and 7.7% of the fungal community, respectively. These fungi showed 2.6-, 1.53- to 6.31- and 1.38- to 2.65-fold higher enrichment in sick soils compared with healthy soils, and their high densities reduced the fungal richness in the areas surrounding the rotted Fuzi roots. An abundance analysis suggested that A. rolfsii and Mucor racemosus, as the dominant pathogens, might play important roles in the invading Fuzi tissue, and Phoma adonidicola could be another pathogenic fungus of root rot. In contrast, Mortierella chlamydospora, Penicillium simplicissimum, Epicoccum nigrum, Cyberlindnera saturnus and Rhodotorula ingeniosa might antagonize root rot pathogens in sick soils. In addition, A. rolfsii was further verified as a main pathogen of Fuzi root rot disease through hypha purification, morphological observation, molecular identification and an infection test. These results provide theoretical guidance for the prevention and treatment of Fuzi root rot disease.Entities:
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Year: 2018 PMID: 30379951 PMCID: PMC6209216 DOI: 10.1371/journal.pone.0205891
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Diseased Aconitum carmichaelii (Fuzi) plants.
Fig 2Relative abundance of rhizosphere fungi around Fuzi roots at the genus level.
Relative abundance of rhizosphere fungi at the genus level.
| Genus | Relative abundance in rhizosphere soils (%) | |||
|---|---|---|---|---|
| G1 | G2 | G3 | G4 | |
| 0.05627±0.0294 | 0.029317±0.0089 | 0.077484±0.0977 | 0.364652±0.0172 | |
| 0.066607±0.0015 | 0.00192±0.0013 | 0.000812±0.0005 | 0.002565±0.0011 | |
| 0.029211±0.0085 | 0.094064±0.0145 | 0.09101±0.0784 | 0.006624±0.0045 | |
| 0.038747±0.0084 | 0.038703±0.0072 | 0.10287±0.0856 | 0.001846±0.0008 | |
| 0.066228±0.0554 | 0.015694±0.0044 | 0.100743±0.1006 | 0.003539±0.0005 | |
| 0.000752±0.0003 | 0.000996±0.0001 | 0.000048±0.0000 | 0.044616±0.0231 | |
| 0.025143±0.0238 | 0.000268±0.0002 | 0.000014±0.0000 | 0.000244±0.0002 | |
| 0.00038±0.0002 | 0.000243±0.0002 | 0.000124±0.0001 | 0.026304±0.0112 | |
| 0.002945±0.0018 | 0.016984±0.0089 | 0.001149±0.0010 | 0.000219±0.0002 | |
| 0.007578±0.0016 | 0.000294±0.0001 | 0.000076±0.0000 | 0.003705±0.0033 | |
| Others | 0.706139±0.1167 | 0.801516±0.2072 | 0.62567±0.3017 | 0.545687±0.1307 |
Fig 3UPGMA cluster tree (A) and relative abundance (B) of rhizosphere fungi around Fuzi roots at the phylum level.
Fig 4Heat map of the abundance of rhizosphere fungi around Fuzi roots at the genus level.
Relative abundance of rhizosphere fungi around Fuzi roots.
| Fungus species | Relative abundance in rhizosphere soils (%) | |||
|---|---|---|---|---|
| G1 | G2 | G3 | G4 | |
| 0.003721±0.0008 | 0.005126±0.0049 | 0.001115±0.0005 | 0.289409±0.1870 | |
| 0.065368±0.0443 | 0.001136±0.0010 | 0.000138±0.0001 | 0.001379±0.0013 | |
| 0.024462±0.0145 | 0.086455±0.0778 | 0.073272±0.0680 | 0.004989±0.0038 | |
| 0.038677±0.0221 | 0.038367±0.0209 | 0.102828±0.0956 | 0.001797±0.0008 | |
| 0.059967±0.0479 | 0.014398±0.0045 | 0.093584±0.0734 | 0.001925±0.0007 | |
| 0.041382±0.0312 | 0.010645±0.0058 | 0.07352±0.0580 | 0.001879±0.0006 | |
| 0.000752±0.0003 | 0.000996±0.0006 | 0.000048±0.0000 | 0.044616±0.0331 | |
| 0.025143±0.0138 | 0.000268±0.0002 | 0.000014±0.0000 | 0.000244±0.0002 | |
| 0.000211±0.0001 | 0.000134±0.0001 | 0.000007±0.0000 | 0.02601±0.0110 | |
| 0.002912±0.0018 | 0.016984±0.0099 | 0.001149±0.0010 | 0.000219±0.0002 | |
| 0.000756±0.0002 | 0.001482±0.0004 | 0.000213±0.0002 | 0.03273±0.0244 | |
| 0.001161±0.0004 | 0.000661±0.0008 | 0 | 0.026704±0.0222 | |
| 0.007529±0.0016 | 0.000263±0.0001 | 0.000076±0.0000 | 0.002817±0.0027 | |
| 0.002577±0.0011 | 0.008151±0.0045 | 0.000255±0.0001 | 0.000496±0.0002 | |
| 0.000322±0.0001 | 0.000196±0.0001 | 0.000096±0.0000 | 0.009115±0.0073 | |
| 0.008541±0.0053 | 0.000780±0.0005 | 0.000028±0.0000 | 0.000058±0.0000 | |
| 0.006088±0.0041 | 0.000909±0.0006 | 0.000847±0.0006 | 0.001747±0.0011 | |
| 0.005555±0.0020 | 0.008900±0.0017 | 0.002154±0.0011 | 0.000525±0.0004 | |
| 0.000376±0.0003 | 0.000160±0.0001 | 0 | 0.007603±0.0034 | |
| 0.000045±0.0000 | 0.00001±0.0000 | 0.000014±0.0000 | 0.004328±0.0016 | |
| 0.000946±0.0005 | 0.001223±0.0010 | 0.006925±0.0018 | 0.001218±0.0010 | |
| 0.001627±0.0009 | 0.005152±0.0011 | 0.000021±0.0000 | 0.000021±0.0000 | |
| 0.000206±0.0002 | 0.000284±0.0002 | 0.006814±0.0011 | 0.000025±0.0000 | |
| 0.000644±0.0002 | 0.000191±0.0000 | 0.000034±0.0000 | 0.005513±0.0039 | |
Fig 5Variation in the fungal composition of the four soil groups determined by PCA.
Fig 6Hyphal morphology of suspected pathogens causing Fuzi root rot disease.
Fig 7Cultivation of suspected pathogenic fungus (A) and its sclerotium (B) in PDA medium.
Fig 8Phylogenetic tree of A. rolfsii strains.