Literature DB >> 30364630

Application of Graph Theory to Assess Static and Dynamic Brain Connectivity: Approaches for Building Brain Graphs.

Qingbao Yu1, Yuhui Du2, Jiayu Chen1, Jing Sui3, Tulay Adali4, Godfrey Pearlson5, Vince D Calhoun6.   

Abstract

Human brain connectivity is complex. Graph theory based analysis has become a powerful and popular approach for analyzing brain imaging data, largely because of its potential to quantitatively illuminate the networks, the static architecture in structure and function, the organization of dynamic behavior over time, and disease related brain changes. The first step in creating brain graphs is to define the nodes and edges connecting them. We review a number of approaches for defining brain nodes including fixed versus data-driven nodes. Expanding the narrow view of most studies which focus on static and/or single modality brain connectivity, we also survey advanced approaches and their performances in building dynamic and multi-modal brain graphs. We show results from both simulated and real data from healthy controls and patients with mental illnesse. We outline the advantages and challenges of these various techniques. By summarizing and inspecting recent studies which analyzed brain imaging data based on graph theory, this article provides a guide for developing new powerful tools to explore complex brain networks.

Entities:  

Keywords:  brain graph; dynamic; multi-modal; nodes

Year:  2018        PMID: 30364630      PMCID: PMC6197492          DOI: 10.1109/JPROC.2018.2825200

Source DB:  PubMed          Journal:  Proc IEEE Inst Electr Electron Eng        ISSN: 0018-9219            Impact factor:   10.961


  247 in total

1.  Revealing modular architecture of human brain structural networks by using cortical thickness from MRI.

Authors:  Zhang J Chen; Yong He; Pedro Rosa-Neto; Jurgen Germann; Alan C Evans
Journal:  Cereb Cortex       Date:  2008-02-10       Impact factor: 5.357

2.  Test-retest reliability of resting-state connectivity network characteristics using fMRI and graph theoretical measures.

Authors:  Urs Braun; Michael M Plichta; Christine Esslinger; Carina Sauer; Leila Haddad; Oliver Grimm; Daniela Mier; Sebastian Mohnke; Andreas Heinz; Susanne Erk; Henrik Walter; Nina Seiferth; Peter Kirsch; Andreas Meyer-Lindenberg
Journal:  Neuroimage       Date:  2011-08-23       Impact factor: 6.556

3.  Aging alterations in whole-brain networks during adulthood mapped with the minimum spanning tree indices: the interplay of density, connectivity cost and life-time trajectory.

Authors:  Willem M Otte; Eric van Diessen; Subhadip Paul; Rajiv Ramaswamy; V P Subramanyam Rallabandi; Cornelis J Stam; Prasun K Roy
Journal:  Neuroimage       Date:  2015-01-10       Impact factor: 6.556

Review 4.  Functional connectivity dynamically evolves on multiple time-scales over a static structural connectome: Models and mechanisms.

Authors:  Joana Cabral; Morten L Kringelbach; Gustavo Deco
Journal:  Neuroimage       Date:  2017-03-23       Impact factor: 6.556

5.  Changes in structural and functional connectivity among resting-state networks across the human lifespan.

Authors:  Richard F Betzel; Lisa Byrge; Ye He; Joaquín Goñi; Xi-Nian Zuo; Olaf Sporns
Journal:  Neuroimage       Date:  2014-08-07       Impact factor: 6.556

6.  Age- and gender-related differences in the cortical anatomical network.

Authors:  Gaolang Gong; Pedro Rosa-Neto; Felix Carbonell; Zhang J Chen; Yong He; Alan C Evans
Journal:  J Neurosci       Date:  2009-12-16       Impact factor: 6.167

7.  Identifying Basal Ganglia divisions in individuals using resting-state functional connectivity MRI.

Authors:  Kelly Anne Barnes; Alexander L Cohen; Jonathan D Power; Steven M Nelson; Yannic B L Dosenbach; Francis M Miezin; Steven E Petersen; Bradley L Schlaggar
Journal:  Front Syst Neurosci       Date:  2010-06-10

8.  Assessing dynamic brain graphs of time-varying connectivity in fMRI data: application to healthy controls and patients with schizophrenia.

Authors:  Qingbao Yu; Erik B Erhardt; Jing Sui; Yuhui Du; Hao He; Devon Hjelm; Mustafa S Cetin; Srinivas Rachakonda; Robyn L Miller; Godfrey Pearlson; Vince D Calhoun
Journal:  Neuroimage       Date:  2014-12-13       Impact factor: 6.556

9.  The Neonatal Connectome During Preterm Brain Development.

Authors:  Martijn P van den Heuvel; Karina J Kersbergen; Marcel A de Reus; Kristin Keunen; René S Kahn; Floris Groenendaal; Linda S de Vries; Manon J N L Benders
Journal:  Cereb Cortex       Date:  2014-05-15       Impact factor: 5.357

Review 10.  Can brain state be manipulated to emphasize individual differences in functional connectivity?

Authors:  Emily S Finn; Dustin Scheinost; Daniel M Finn; Xilin Shen; Xenophon Papademetris; R Todd Constable
Journal:  Neuroimage       Date:  2017-03-31       Impact factor: 6.556

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  14 in total

Review 1.  Applications of dynamic functional connectivity to pain and its modulation.

Authors:  Elizabeth A Necka; In-Seon Lee; Aaron Kucyi; Joshua C Cheng; Qingbao Yu; Lauren Y Atlas
Journal:  Pain Rep       Date:  2019-08-07

2.  The Translational Potential of Neuroimaging Genomic Analyses To Diagnosis And Treatment In The Mental Disorders.

Authors:  Jiayu Chen; Jingyu Liu; Vince D Calhoun
Journal:  Proc IEEE Inst Electr Electron Eng       Date:  2019-05-09       Impact factor: 10.961

3.  A method for building a genome-connectome bipartite graph model.

Authors:  Qingbao Yu; Jiayu Chen; Yuhui Du; Jing Sui; Eswar Damaraju; Jessica A Turner; Theo G M van Erp; Fabio Macciardi; Aysenil Belger; Judith M Ford; Sarah McEwen; Daniel H Mathalon; Bryon A Mueller; Adrian Preda; Jatin Vaidya; Godfrey D Pearlson; Vince D Calhoun
Journal:  J Neurosci Methods       Date:  2019-03-19       Impact factor: 2.390

4.  A Multi-Factorial Assessment of Functional Human Autistic Spectrum Brain Network Analysis.

Authors:  Oswaldo Artiles; Fahad Saeed
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2021-12

5.  Path analysis: A method to estimate altered pathways in time-varying graphs of neuroimaging data.

Authors:  Haleh Falakshahi; Hooman Rokham; Zening Fu; Armin Iraji; Daniel H Mathalon; Judith M Ford; Bryon A Mueller; Adrian Preda; Theo G M van Erp; Jessica A Turner; Sergey Plis; Vince D Calhoun
Journal:  Netw Neurosci       Date:  2022-07-01

Review 6.  Principles and open questions in functional brain network reconstruction.

Authors:  Onerva Korhonen; Massimiliano Zanin; David Papo
Journal:  Hum Brain Mapp       Date:  2021-05-20       Impact factor: 5.038

7.  Neural Activity and Decoding of Action Observation Using Combined EEG and fNIRS Measurement.

Authors:  Sheng Ge; Peng Wang; Hui Liu; Pan Lin; Junfeng Gao; Ruimin Wang; Keiji Iramina; Quan Zhang; Wenming Zheng
Journal:  Front Hum Neurosci       Date:  2019-10-15       Impact factor: 3.169

Review 8.  Insight Into the Effects of Clinical Repetitive Transcranial Magnetic Stimulation on the Brain From Positron Emission Tomography and Magnetic Resonance Imaging Studies: A Narrative Review.

Authors:  Lucero Aceves-Serrano; Jason L Neva; Doris J Doudet
Journal:  Front Neurosci       Date:  2022-02-21       Impact factor: 4.677

9.  Disruptions in global network segregation and integration in adolescents and young adults with fetal alcohol spectrum disorder.

Authors:  Carlos I Rodriguez; Victor M Vergara; Vince D Calhoun; Daniel D Savage; Derek A Hamilton; Claudia D Tesche; Julia M Stephen
Journal:  Alcohol Clin Exp Res       Date:  2021-08-02       Impact factor: 3.928

10.  Structural Analysis of Brain Hub Region Volume and Cortical Thickness in Patients with Mild Cognitive Impairment and Dementia.

Authors:  Nauris Zdanovskis; Ardis Platkājis; Andrejs Kostiks; Guntis Karelis
Journal:  Medicina (Kaunas)       Date:  2020-09-24       Impact factor: 2.430

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