Literature DB >> 30359017

Engineering Salt Bridge Networks between Transmembrane Helices Confers Thermostability in G-Protein-Coupled Receptors.

Soumadwip Ghosh1, Tobias Bierig2, Sangbae Lee, Suvamay Jana, Adelheid Löhle, Gisela Schnapp2, Christofer S Tautermann2, Nagarajan Vaidehi1.   

Abstract

Introduction of specific point mutations has been an effective strategy in enhancing the thermostability of G-protein-coupled receptors (GPCRs). Our previous work showed that a specific residue position on transmembrane helix 6 (TM6) in class A GPCRs consistently yields thermostable mutants. The crystal structure of human chemokine receptor CCR5 also showed increased thermostability upon mutation of two positions, A233D6.33 and K303E7.59. With the goal of testing the transferability of these two thermostabilizing mutations in other chemokine receptors, we tested the mutations A237D6.33 and R307E7.59 in human CCR3 for thermostability and aggregation properties in detergent solution. Interestingly, the double mutant exhibited a 6-10-fold decrease in the aggregation propensity of the wild-type protein. This is in stark contrast to the two single mutants whose aggregation properties resemble the wild type (WT). Moreover, unlike in CCR5, the two single mutants separately showed no increase in thermostability compared to the wild-type CCR3, while the double-mutant A237D6.33/R307E7.59 confers an increase of 2.6 °C in the melting temperature compared to the WT. Extensive all-atom molecular dynamics (MD) simulations in detergent micelles show that a salt bridge network between transmembrane helices TM3, TM6, and TM7 that is absent in the two single mutants confers stability in the double mutant. The free energy surface of the double mutant shows conformational homogeneity compared to the single mutants. An annular n-dodecyl maltoside detergent layer packs tighter to the hydrophobic surface of the double-mutant CCR3 compared to the single mutants providing additional stability. The purification of other C-C chemokine receptors lacking such stabilizing residues may benefit from the incorporation of these two point mutations.

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Year:  2018        PMID: 30359017      PMCID: PMC6549507          DOI: 10.1021/acs.jctc.8b00602

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  42 in total

1.  High-throughput modeling of human G-protein coupled receptors: amino acid sequence alignment, three-dimensional model building, and receptor library screening.

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2.  Scalable molecular dynamics with NAMD.

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Journal:  J Comput Chem       Date:  2005-12       Impact factor: 3.376

3.  CHARMM-GUI: a web-based graphical user interface for CHARMM.

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4.  Instability of a class a G protein-coupled receptor oligomer interface.

Authors:  Jacqueline M Fonseca; Nevin A Lambert
Journal:  Mol Pharmacol       Date:  2009-03-09       Impact factor: 4.436

5.  Development and crystallization of a minimal thermostabilised G protein-coupled receptor.

Authors:  Tony Warne; Maria J Serrano-Vega; Christopher G Tate; Gebhard F X Schertler
Journal:  Protein Expr Purif       Date:  2009-06       Impact factor: 1.650

Review 6.  Structural diversity of G protein-coupled receptors and significance for drug discovery.

Authors:  Malin C Lagerström; Helgi B Schiöth
Journal:  Nat Rev Drug Discov       Date:  2008-04       Impact factor: 84.694

7.  Co-evolving stability and conformational homogeneity of the human adenosine A2a receptor.

Authors:  Francesca Magnani; Yoko Shibata; Maria J Serrano-Vega; Christopher G Tate
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-29       Impact factor: 11.205

8.  From rigid cyclic templates to conformationally stabilized acyclic scaffolds. Part II: Acyclic replacements for the (3S)-3-benzylpiperidine in a series of potent CCR3 antagonists.

Authors:  Daniel S Gardner; Joseph B Santella; Andrew J Tebben; Douglas G Batt; Soo S Ko; Sarah C Traeger; Patricia K Welch; Eric A Wadman; Paul Davies; Percy H Carter; John V Duncia
Journal:  Bioorg Med Chem Lett       Date:  2007-11-28       Impact factor: 2.823

9.  Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors.

Authors:  Thomas E Angel; Mark R Chance; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-11       Impact factor: 11.205

10.  Conformational thermostabilization of the beta1-adrenergic receptor in a detergent-resistant form.

Authors:  Maria J Serrano-Vega; Francesca Magnani; Yoko Shibata; Christopher G Tate
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-11       Impact factor: 11.205

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  4 in total

1.  Machine Learning for Prioritization of Thermostabilizing Mutations for G-Protein Coupled Receptors.

Authors:  Sanychen Muk; Soumadwip Ghosh; Srisairam Achuthan; Xiaomin Chen; XiaoJie Yao; Manbir Sandhu; Matthew C Griffor; Kimberly F Fennell; Ye Che; Veerabahu Shanmugasundaram; Xiayang Qiu; Christopher G Tate; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2019-10-24       Impact factor: 4.033

2.  Structural instability and divergence from conserved residues underlie intracellular retention of mammalian odorant receptors.

Authors:  Kentaro Ikegami; Claire A de March; Maira H Nagai; Soumadwip Ghosh; Matthew Do; Ruchira Sharma; Elise S Bruguera; Yueyang Eric Lu; Yosuke Fukutani; Nagarajan Vaidehi; Masafumi Yohda; Hiroaki Matsunami
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-23       Impact factor: 11.205

3.  A universal allosteric mechanism for G protein activation.

Authors:  Kevin M Knight; Soumadwip Ghosh; Sharon L Campbell; Tyler J Lefevre; Reid H J Olsen; Alan V Smrcka; Natalie H Valentin; Guowei Yin; Nagarajan Vaidehi; Henrik G Dohlman
Journal:  Mol Cell       Date:  2021-02-25       Impact factor: 17.970

4.  Sequence coevolution and structure stabilization modulate olfactory receptor expression.

Authors:  Soumadwip Ghosh; Claire A de March; Sergio Branciamore; Sahar Kaleem; Hiroaki Matsunami; Nagarajan Vaidehi
Journal:  Biophys J       Date:  2022-01-20       Impact factor: 4.033

  4 in total

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