| Literature DB >> 30356085 |
Betony Adams1,2, Ilya Sinayskiy3,4, Francesco Petruccione3,4,5.
Abstract
The development of the radical pair mechanism has allowed for theoretical explanation of the fact that magnetic fields are observed to have an effect on chemical reactions. The mechanism describes how an external magnetic field can alter chemical yields by interacting with the spin state of a pair of radicals. In the field of quantum biology, there has been some interest in the application of the mechanism to biological systems. This paper takes an open quantum systems approach to a model of the radical pair mechanism in order to derive a master equation in the Born-Markov approximation for the case of two electrons, each interacting with an environment of nuclear spins as well as the external magnetic field, then placed in a dissipative bosonic bath. This model is used to investigate two different cases relating to radical pair dynamics. The first uses a collective coupling approach to simplify calculations for larger numbers of nuclei interacting with the radical pair. The second looks at the effects of different hyperfine configurations of the radical pair model, for instance the case in which one of the electrons interact with two nuclei with different hyperfine coupling constants. The results of these investigations are analysed to see if they offer any insights into the biological application of the radical pair mechanism in avian magnetoreception.Entities:
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Year: 2018 PMID: 30356085 PMCID: PMC6200754 DOI: 10.1038/s41598-018-34007-4
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1A diagram of the model shows the two electrons e1 and e2 that make up the spatially separated but spin correlated radical pair. Each electron experiences a hyperfine interaction with its nuclear environment, represented here by three and five arrows (nuclei) for e1 and e2 respectively. Both electrons experience the Zeeman effect due to the external geomagnetic field. Each of the radicals in the pair (modelled as the system, in Section (2.1)) is then assumed to interact with an external heat bath, undergoing decoherence and dissipation. This allows for a mathematical description of the second step of the radical pair mechanism, as outlined in the Introduction.
Figure 2Graphs (a–f) illustrate the effects of decoherence and dissipation as the number of nuclei interacting with the radical pair increases. These effects are represented as the probability over time of finding the radical pair in one of the four possible spin states. There is a general trend towards a decreased coherence lifetime, this is because increasing the number of nuclei in the model, increases the number of possible transitions which allows for a greater dissipative effect from the environment. This effect is however not equal for odd and even numbers of nuclei, the radical pair decays slower when j is equal to integer values. The reason for this is that for integer values of j the possibility exists that both radicals in the pair could have j = 0 which leads to a particularly long lifetime. This is illustrated in Fig. 3. An additional difference between integer and non-integer j is the slightly faster oscillation between singlet and triplet states for the case of integer spin.
Figure 3The graph illustrates the long lifetime for the case in which j = 0 for both radicals in the pair.
Figure 4Graphs (a–c) illustrate the effects that different configurations of hyperfine coupling strength have on the rate of decoherence and dissipation for the radical pair. What is interesting is that the strength of the coupling constant does not dominantly influence the coherence lifetime of the radical pair. Where both nuclei interact with comparable magnitude (both of the order of 107 for Graph (a) and both of the order of 104 for Graph (b)) the dissipation happens more slowly whereas if the two nuclei have markedly different coupling magnitudes (Graph (c)) the dissipation happens more quickly. This is because in the latter configuration a greater proportion of the transition frequencies give rise to quicker transition rates. This suggests a less than straightforward correlation between hyperfine coupling strength and coherence lifetime, where there might be an optimal combination of hyperfine coupling constants that allows for longer lasting coherence. The inset details of Graphs (a–c) demonstrate a number of different dynamics. Where the size of the coupling constant does have an effect is in the rate of oscillation between singlet and triplet states. This is clearly illustrated by the fast oscillations of Graph (a and c), where at least one of the nuclei has a strong coupling constant, while Graph (b), where both nuclei interact with a comparable but smaller magnitude (104 as opposed to 107 Hz) the singlet and triplet 1 states oscillate very slowly and triplet states 2 and 3 do not oscillate at all. Note the different time scale. Finally, the ‘beating’ effect, or additional slower oscillation, that is apparent in Graphs (a and c) arises from the Zeeman contribution of the magnetic field where the field strength (1.3 × 106 Hz) is comparable to the strength of at least one of the hyperfine coupling strengths.
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