Literature DB >> 33353307

Gated Proton Release during Radical Transfer at the Subunit Interface of Ribonucleotide Reductase.

Chang Cui1, Brandon L Greene2, Gyunghoon Kang3,4, Catherine L Drennan3,4,5,6, JoAnne Stubbe3,5, Daniel G Nocera1.   

Abstract

The class Ia ribonucleotide reductase of Escherichia coli requires strict regulation of long-range radical transfer between two subunits, α and β, through a series of redox-active amino acids (Y122•[β] ↔ W48?[β] ↔ Y356[β] ↔ Y731[α] ↔ Y730[α] ↔ C439[α]). Nowhere is this more precarious than at the subunit interface. Here, we show that the oxidation of Y356 is regulated by proton release involving a specific residue, E52[β], which is part of a water channel at the subunit interface for rapid proton transfer to the bulk solvent. An E52Q variant is incapable of Y356 oxidation via the native radical transfer pathway or non-native photochemical oxidation, following photosensitization by covalent attachment of a photo-oxidant at position 355[β]. Substitution of Y356 for various FnY analogues in an E52Q-photoβ2, where the side chain remains deprotonated, recovered photochemical enzymatic turnover. Transient absorption and emission data support the conclusion that Y356 oxidation requires E52 for proton management, suggesting its essential role in gating radical transport across the protein-protein interface.

Entities:  

Year:  2020        PMID: 33353307      PMCID: PMC7904477          DOI: 10.1021/jacs.0c07879

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  Conformational Motions and Water Networks at the α/β Interface in E. coli Ribonucleotide Reductase.

Authors:  Clorice R Reinhardt; Pengfei Li; Gyunghoon Kang; JoAnne Stubbe; Catherine L Drennan; Sharon Hammes-Schiffer
Journal:  J Am Chem Soc       Date:  2020-07-28       Impact factor: 15.419

Review 2.  Ribonucleotide reductase inhibitors and future drug design.

Authors:  J Shao; B Zhou; Bernard Chu; Y Yen
Journal:  Curr Cancer Drug Targets       Date:  2006-08       Impact factor: 3.428

3.  Photochemical Generation of a Tryptophan Radical within the Subunit Interface of Ribonucleotide Reductase.

Authors:  Lisa Olshansky; Brandon L Greene; Chelsea Finkbeiner; JoAnne Stubbe; Daniel G Nocera
Journal:  Biochemistry       Date:  2016-05-31       Impact factor: 3.162

4.  A rapid assay for CDP reductase activity in mammalian cell extracts.

Authors:  J R Steeper; C D Steuart
Journal:  Anal Biochem       Date:  1970-03       Impact factor: 3.365

5.  A discrete water exit pathway in the membrane protein cytochrome c oxidase.

Authors:  Bryan Schmidt; John McCracken; Shelagh Ferguson-Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-05       Impact factor: 11.205

6.  Photochemical Rescue of a Conformationally Inactivated Ribonucleotide Reductase.

Authors:  Brandon L Greene; JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2018-11-12       Impact factor: 15.419

7.  Structure of a trapped radical transfer pathway within a ribonucleotide reductase holocomplex.

Authors:  Gyunghoon Kang; Alexander T Taguchi; JoAnne Stubbe; Catherine L Drennan
Journal:  Science       Date:  2020-03-26       Impact factor: 47.728

Review 8.  Clinical pharmacology and clinical trials of ribonucleotide reductase inhibitors: is it a viable cancer therapy?

Authors:  Mukundan Baskar Mannargudi; Subrata Deb
Journal:  J Cancer Res Clin Oncol       Date:  2017-06-17       Impact factor: 4.322

9.  A >200 meV Uphill Thermodynamic Landscape for Radical Transport in Escherichia coli Ribonucleotide Reductase Determined Using Fluorotyrosine-Substituted Enzymes.

Authors:  Kanchana R Ravichandran; Alexander T Taguchi; Yifeng Wei; Cecilia Tommos; Daniel G Nocera; JoAnne Stubbe
Journal:  J Am Chem Soc       Date:  2016-10-07       Impact factor: 15.419

10.  Radical transfer in E. coli ribonucleotide reductase: a NH2Y731/R411A-α mutant unmasks a new conformation of the pathway residue 731.

Authors:  Müge Kasanmascheff; Wankyu Lee; Thomas U Nick; JoAnne Stubbe; Marina Bennati
Journal:  Chem Sci       Date:  2015-12-09       Impact factor: 9.825

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  5 in total

1.  19F Electron-Nuclear Double Resonance Reveals Interaction between Redox-Active Tyrosines across the α/β Interface of E. coli Ribonucleotide Reductase.

Authors:  Andreas Meyer; Annemarie Kehl; Chang Cui; Fehmke A K Reichardt; Fabian Hecker; Lisa-Marie Funk; Manas K Ghosh; Kuan-Ting Pan; Henning Urlaub; Kai Tittmann; JoAnne Stubbe; Marina Bennati
Journal:  J Am Chem Soc       Date:  2022-06-02       Impact factor: 16.383

2.  Detection of Water Molecules on the Radical Transfer Pathway of Ribonucleotide Reductase by 17O Electron-Nuclear Double Resonance Spectroscopy.

Authors:  Fabian Hecker; JoAnne Stubbe; Marina Bennati
Journal:  J Am Chem Soc       Date:  2021-05-06       Impact factor: 15.419

3.  Radicals in Biology: Your Life Is in Their Hands.

Authors:  JoAnne Stubbe; Daniel G Nocera
Journal:  J Am Chem Soc       Date:  2021-08-23       Impact factor: 15.419

Review 4.  Functional and protective hole hopping in metalloenzymes.

Authors:  Harry B Gray; Jay R Winkler
Journal:  Chem Sci       Date:  2021-09-27       Impact factor: 9.825

5.  Strategies for switching the mechanism of proton-coupled electron transfer reactions illustrated by mechanistic zone diagrams.

Authors:  Robin Tyburski; Leif Hammarström
Journal:  Chem Sci       Date:  2021-12-06       Impact factor: 9.825

  5 in total

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