Literature DB >> 30344361

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis.

Naiyun Zhou1, Xiaxia Yu2, Tianhao Zhao2, Si Wen3, Fusheng Wang2,4, Wei Zhu3, Tahsin Kurc2,4, Allen Tannenbaum4,3, Joel Saltz2,4, Yi Gao2,3.   

Abstract

Digital histopathology images with more than 1 Gigapixel are drawing more and more attention in clinical, biomedical research, and computer vision fields. Among the multiple observable features spanning multiple scales in the pathology images, the nuclear morphology is one of the central criteria for diagnosis and grading. As a result it is also the mostly studied target in image computing. Large amount of research papers have devoted to the problem of extracting nuclei from digital pathology images, which is the foundation of any further correlation study. However, the validation and evaluation of nucleus extraction have yet been formulated rigorously and systematically. Some researches report a human verified segmentation with thousands of nuclei, whereas a single whole slide image may contain up to million. The main obstacle lies in the difficulty of obtaining such a large number of validated nuclei, which is essentially an impossible task for pathologist. We propose a systematic validation and evaluation approach based on large scale image synthesis. This could facilitate a more quantitatively validated study for current and future histopathology image analysis field.

Entities:  

Keywords:  histopathology; image synthesis; nucleus extraction; segmentation evaluation

Year:  2017        PMID: 30344361      PMCID: PMC6195367          DOI: 10.1117/12.2254220

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  17 in total

1.  Nonlinear dimensionality reduction by locally linear embedding.

Authors:  S T Roweis; L K Saul
Journal:  Science       Date:  2000-12-22       Impact factor: 47.728

2.  AN EFFICIENT NUMERICAL METHOD FOR THE SOLUTION OF THE L(2) OPTIMAL MASS TRANSFER PROBLEM.

Authors:  Eldad Haber; Tauseef Rehman; Allen Tannenbaum
Journal:  SIAM J Sci Comput       Date:  2010       Impact factor: 2.373

3.  Combining intensity, edge and shape information for 2D and 3D segmentation of cell nuclei in tissue sections.

Authors:  C Wählby; I-M Sintorn; F Erlandsson; G Borgefors; E Bengtsson
Journal:  J Microsc       Date:  2004-07       Impact factor: 1.758

4.  Unsupervised segmentation based on robust estimation and color active contour models.

Authors:  Lin Yang; Peter Meer; David J Foran
Journal:  IEEE Trans Inf Technol Biomed       Date:  2005-09

5.  A watershed based segmentation method for multispectral chromosome images classification.

Authors:  Petros S Karvelis; Dimitrios I Fotiadis; Ioannis Georgiou; Marika Syrrou
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

Review 6.  Histopathological image analysis: a review.

Authors:  Metin N Gurcan; Laura E Boucheron; Ali Can; Anant Madabhushi; Nasir M Rajpoot; B Yener
Journal:  IEEE Rev Biomed Eng       Date:  2009-10-30

7.  Image analysis for neuroblastoma classification: segmentation of cell nuclei.

Authors:  Metin N Gurcan; Tony Pan; Hiro Shimada; Joel Saltz
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2006

8.  Comparison of pathologist-detected and automated computer-assisted image analysis detected sentinel lymph node micrometastases in breast cancer.

Authors:  Donald L Weaver; David N Krag; Edward A Manna; Taka Ashikaga; Seth P Harlow; Kenneth D Bauer
Journal:  Mod Pathol       Date:  2003-11       Impact factor: 7.842

9.  Interpolation of Longitudinal Shape and Image Data via Optimal Mass Transport.

Authors:  Yi Gao; Liang-Jia Zhu; Sylvain Bouix; Allen Tannenbaum
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2014-03-21

10.  Machine-based morphologic analysis of glioblastoma using whole-slide pathology images uncovers clinically relevant molecular correlates.

Authors:  Jun Kong; Lee A D Cooper; Fusheng Wang; Jingjing Gao; George Teodoro; Lisa Scarpace; Tom Mikkelsen; Matthew J Schniederjan; Carlos S Moreno; Joel H Saltz; Daniel J Brat
Journal:  PLoS One       Date:  2013-11-13       Impact factor: 3.240

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  2 in total

1.  The bumps under the hippocampus.

Authors:  Cheng Chang; Chuan Huang; Naiyun Zhou; Shawn Xiang Li; Lawrence Ver Hoef; Yi Gao
Journal:  Hum Brain Mapp       Date:  2017-10-23       Impact factor: 5.038

2.  SHARP-GAN: SHARPNESS LOSS REGULARIZED GAN FOR HISTOPATHOLOGY IMAGE SYNTHESIS.

Authors:  Sujata Butte; Haotian Wang; Min Xian; Aleksandar Vakanski
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2022-04-26
  2 in total

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