| Literature DB >> 30333894 |
Kazuyuki Yasukawa1,2, Fumihiro Motojima1,2, Atsushi Ono1, Yasuhisa Asano1,2.
Abstract
Discovery and development of enzymes for the synthesis of chiral amines have been a hot topic for basic and applied aspects of biocatalysts. Based on our X-ray crystallographic analyses of porcine kidney D-amino acid oxidase (pkDAO) and its variants, we rationally designed a new variant that catalyzed the oxidation of (S)-4-Cl-benzhydrylamine (CBHA) from pkDAO and obtained it by functional high-throughput screening with colorimetric assay. The variant I230A/R283G was constructed from the variant R283G which had completely lost the activity for D-amino acids, further gaining new activity toward (S)-chiral amines with the bulky substituents. The variant enzyme (I230A/R283G) was characterized to have a catalytic efficiency of 1.85 s-1 for (S)-CBHA, while that for (R)-1-phenylethylamine was diminished 10-fold as compared with the Y228L/R283G variant. The variant was efficiently used for the synthesis of (R)-CBHA in 96 % ee from racemic CBHA by the deracemization reaction in the presence of reducing agent such as NaBH4 in water. Furthermore, X-ray crystallographic analysis of the new variant complexed with (S)-CBHA, together with modelling study clearly showed the basis of understanding the structure-activity relationship of pkDAO.Entities:
Keywords: Amine oxidase; Chiral amine; D-amino acid oxidase; Deracemization; Oxidation
Year: 2018 PMID: 30333894 PMCID: PMC6174955 DOI: 10.1002/cctc.201800614
Source DB: PubMed Journal: ChemCatChem ISSN: 1867-3880 Impact factor: 5.686
Kinetic parameter of wild‐type and variants pkDAO.
| Substrate | Parameter | Wild‐type | Y228L | R283G | Y228L/R283G | I230A/R283G | I230C/R283G | I230F/R283G |
|---|---|---|---|---|---|---|---|---|
|
|
| n.d.[a] | n.d. | 6.98±0.67 | 7.95±0.78 | 7.28±0.90 | 6.90±1.11 | 6.25±0.89 |
|
| n.d. | n.d. | 1.46±0.08 | 9.93±0.88 | 0.349±0.013 | 0.111±0.014 | 0.0474±0.0059 | |
| ( |
| n.d. | n.d. | 0.211 | 1.26 | 0.0482 | 0.0161 | 0.00777 |
|
|
| n.d. | n.d. | n.d. | n.d. | 5.23±0.65 | 2.40±0.30 | 2.63±0.43 |
|
| n.d. | n.d. | n.d. | n.d. | 3.30±0.49 | 3.42±0.30 | 0.366±0.036 | |
|
|
| n.d. | n.d. | n.d. | n.d. | 0.629 | 1.45 | 0.141 |
|
|
| n.d. | n.d. | n.d. | n.d. | 2.94±0.23 | 2.96±0.23 | 3.73±0.34 |
|
| n.d. | n.d. | n.d. | n.d. | 6.01±0.10 | 5.48±0.46 | 4.33±0.98 | |
| ( |
| n.d. | n.d. | n.d. | n.d. | 2.05 | 1.85 | 1.15 |
|
|
| 5.01±0.27 | 8.41±2.24 | n.d. | n.d. | n.d. | n.d. | n.d. |
|
| 5.19±0.09 | 1.72±0.01 | n.d. | n.d. | n.d. | n.d. | n.d. | |
| ( |
| 1.04 | 0.215 | n.d. | n.d. | n.d. | n.d. | n.d. |
[a] n.d.: not detected.
Substrate specificity of variant pkDAO Y228L/R283G and I230A/R283G.[a]
|
| ||||
|---|---|---|---|---|
| Substrate | Y228L/R283G[b] | I230A/R283G | ||
| R1 | R2 | [%] | [%] | |
| ( | C6H5 | CH3 | 100 | 2.4 |
| ( | C6H5 | CH3 | <0.1 | <0.1 |
| ( | 4‐F‐C6H4 | CH3 | 33.6 | 0.9 |
| ( | 4‐F‐C6H4 | CH3 | <0.1 | <0.1 |
| ( | 4‐Cl‐C6H4 | CH3 | 5.0 | <0.1 |
| ( | 4‐Cl‐C6H4 | CH3 | <0.1 | <0.1 |
|
| C6H5 | C6H5 | n.d.[e] | 10.9 |
| ( | 4‐F‐C6H4 | C6H5 | n.d. | 46.5 |
| ( | 4‐Cl‐C6H4 | C6H5 | n.d. | 45.2 |
| ( | 4‐Cl‐C6H4 | C6H5 | n.d. | <0.1 |
| ( | 4‐Cl‐C6H4 | C6H5 | n.d. | 84.8 |
| ( | 4‐Br‐C6H4 | C6H5 | n.d. | 8.1 |
| ( | C6H5CH2 | CO2H | n.d. | n.d. |
[a] The reaction mixture contained the substrate, 100 mM KPB (pH 8.0), 2 mM phenol, 1.5 mM 4‐aminoantipyrine, 2 U horseradish peroxidase, 10 % DMSO and the amount of enzyme; unless otherwise stated, the substrates were used at a final concentration of 10 mM. [b] The activity of variant Y228L/R283G toward (R)‐1 a was taken as 100 % (18.3 U/mg). [c] Substrates used at a final concentration of 5 mM. [d] Substrates used at a final concentration of 1 mM. [e] n.d.: not detected.
Figure 1The ligand binding in the active site of pkDAO variants. (a) The cartoon model of pkDAO (Y228L/R283G)‐(R)‐1 a complex. (R)‐1 a is shown as ball‐and‐stick model colored cyan. FAD is colored in yellow. The residues mutated for the screening of the variants oxidizing (S)‐2 c are labeled and shown as stick model. (b) The superposition of pkDAO (Y228L/R283G)‐(R)‐1 a complex (blue) and pkDAO (I230A/R283G)‐(S)‐2 c complex (green). (S)‐2 c is shown as ball‐and‐stick model colored magenta. The σA‐weighted F o‐F c omit map (>4.0σ) of (S)‐2 c is shown in blue mesh. The mutated residues are labeled. The distance of α‐carbon of (R)‐1 a and (S)‐2 c to N5 atom of isoalloxazine ring are shown as orange dotted lines (3.15 and 3.48 Å, respectively).
Figure 2Time course of the deracemization of 2 c using variant I230A/R283G. The reaction mixture (1 mL) consisted of 100 mM glycine‐NaOH buffer (pH 9.0), 5 mM (RS)‐2 c, 100 mM NaBH4, and 0.1 U purified enzyme, and the reaction mixture was stirred at 1.3×103 rpm at 30 °C. Symbol; •: (R)‐2 c, ○: (S)‐2 c.