Literature DB >> 30321594

Comparing cryo-EM structures.

Catherine L Lawson1, Wah Chiu2.   

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Year:  2018        PMID： 30321594      PMCID： PMC6464812          DOI： 10.1016/j.jsb.2018.10.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN： 1047-8477            Impact factor:   2.867


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  12 in total

1.  Three-dimensional Structure Databases of Biological Macromolecules.

Authors:  Vaishali P Waman; Christine Orengo; Gerard J Kleywegt; Arthur M Lesk
Journal:  Methods Mol Biol       Date:  2022

2.  High-Throughput Cryo-EM Enabled by User-Free Preprocessing Routines.

Authors:  Yilai Li; Jennifer N Cash; John J G Tesmer; Michael A Cianfrocco
Journal:  Structure       Date:  2020-04-14       Impact factor: 5.006

3.  Flexible Fitting of Small Molecules into Electron Microscopy Maps Using Molecular Dynamics Simulations with Neural Network Potentials.

Authors:  John W Vant; Shae-Lynn J Lahey; Kalyanashis Jana; Mrinal Shekhar; Daipayan Sarkar; Barbara H Munk; Ulrich Kleinekathöfer; Sumit Mittal; Christopher Rowley; Abhishek Singharoy
Journal:  J Chem Inf Model       Date:  2020-03-30       Impact factor: 4.956

4.  Cryo-electron microscopy targets in CASP13: Overview and evaluation of results.

Authors:  Andriy Kryshtafovych; Sony Malhotra; Bohdan Monastyrskyy; Tristan Cragnolini; Agnel-Praveen Joseph; Wah Chiu; Maya Topf
Journal:  Proteins       Date:  2019-10-23

5.  Cryo-EM Map-Based Model Validation Using the False Discovery Rate Approach.

Authors:  Mateusz Olek; Agnel Praveen Joseph
Journal:  Front Mol Biosci       Date:  2021-05-18

6.  Building de novo cryo-electron microscopy structures collaboratively with citizen scientists.

Authors:  Firas Khatib; Ambroise Desfosses; Brian Koepnick; Jeff Flatten; Zoran Popović; David Baker; Seth Cooper; Irina Gutsche; Scott Horowitz
Journal:  PLoS Biol       Date:  2019-11-12       Impact factor: 8.029

7.  Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge.

Authors:  Catherine L Lawson; Andriy Kryshtafovych; Paul D Adams; Pavel V Afonine; Matthew L Baker; Benjamin A Barad; Paul Bond; Tom Burnley; Renzhi Cao; Jianlin Cheng; Grzegorz Chojnowski; Kevin Cowtan; Ken A Dill; Frank DiMaio; Daniel P Farrell; James S Fraser; Mark A Herzik; Soon Wen Hoh; Jie Hou; Li-Wei Hung; Maxim Igaev; Agnel P Joseph; Daisuke Kihara; Dilip Kumar; Sumit Mittal; Bohdan Monastyrskyy; Mateusz Olek; Colin M Palmer; Ardan Patwardhan; Alberto Perez; Jonas Pfab; Grigore D Pintilie; Jane S Richardson; Peter B Rosenthal; Daipayan Sarkar; Luisa U Schäfer; Michael F Schmid; Gunnar F Schröder; Mrinal Shekhar; Dong Si; Abishek Singharoy; Genki Terashi; Thomas C Terwilliger; Andrea Vaiana; Liguo Wang; Zhe Wang; Stephanie A Wankowicz; Christopher J Williams; Martyn Winn; Tianqi Wu; Xiaodi Yu; Kaiming Zhang; Helen M Berman; Wah Chiu
Journal:  Nat Methods       Date:  2021-02-04       Impact factor: 28.547

Review 8.  Evolution of Standardization and Dissemination of Cryo-EM Structures and Data Jointly by the Community, PDB and EMDB.

Authors:  Wah Chiu; Michael F Schmid; Grigore Pintilie; Catherine L Lawson
Journal:  J Biol Chem       Date:  2021-03-17       Impact factor: 5.157

9.  Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures.

Authors:  Helen M Berman; Paul D Adams; Alexandre A Bonvin; Stephen K Burley; Bridget Carragher; Wah Chiu; Frank DiMaio; Thomas E Ferrin; Margaret J Gabanyi; Thomas D Goddard; Patrick R Griffin; Juergen Haas; Christian A Hanke; Jeffrey C Hoch; Gerhard Hummer; Genji Kurisu; Catherine L Lawson; Alexander Leitner; John L Markley; Jens Meiler; Gaetano T Montelione; George N Phillips; Thomas Prisner; Juri Rappsilber; David C Schriemer; Torsten Schwede; Claus A M Seidel; Timothy S Strutzenberg; Dmitri I Svergun; Emad Tajkhorshid; Jill Trewhella; Brinda Vallat; Sameer Velankar; Geerten W Vuister; Benjamin Webb; John D Westbrook; Kate L White; Andrej Sali
Journal:  Structure       Date:  2019-11-25       Impact factor: 5.006

10.  Comparing Cryo-EM Reconstructions and Validating Atomic Model Fit Using Difference Maps.

Authors:  Agnel Praveen Joseph; Ingvar Lagerstedt; Arjen Jakobi; Tom Burnley; Ardan Patwardhan; Maya Topf; Martyn Winn
Journal:  J Chem Inf Model       Date:  2020-02-11       Impact factor: 4.956
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