| Literature DB >> 31576602 |
Andriy Kryshtafovych1, Sony Malhotra2, Bohdan Monastyrskyy1, Tristan Cragnolini2, Agnel-Praveen Joseph2, Wah Chiu3, Maya Topf2.
Abstract
Structures of seven CASP13 targets were determined using cryo-electron microscopy (cryo-EM) technique with resolution between 3.0 and 4.0 Å. We provide an overview of the experimentally derived structures and describe results of the numerical evaluation of the submitted models. The evaluation is carried out by comparing coordinates of models to those of reference structures (CASP-style evaluation), as well as checking goodness-of-fit of modeled structures to the cryo-EM density maps. The performance of contributing research groups in the CASP-style evaluation is measured in terms of backbone accuracy, all-atom local geometry and similarity of inter-subunit interfaces. The results on the cryo-EM targets are compared with those on the whole set of eighty CASP13 targets. A posteriori refinement of the best models in their corresponding cryo-EM density maps resulted in structures that are very close to the reference structure, including some regions with better fit to the density.Entities:
Keywords: CASP; cryo-EM; electron microscopy; model evaluation; protein structure prediction
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Year: 2019 PMID: 31576602 PMCID: PMC7197460 DOI: 10.1002/prot.25817
Source DB: PubMed Journal: Proteins ISSN: 0887-3585