Literature DB >> 30316104

Elucidating binding mechanisms and dynamics of intrinsically disordered protein complexes using NMR spectroscopy.

Robert Schneider1, Martin Blackledge2, Malene Ringkjøbing Jensen3.   

Abstract

Advances in characterizing complexes of intrinsically disordered proteins (IDPs) have led to the discovery of a remarkably diverse interaction landscape that includes folding-upon-binding, highly dynamic complexes, multivalent interactions as well as regulatory switches controlled by post-translational modifications. Nuclear magnetic resonance (NMR) spectroscopy has in recent years made significant contributions to this field by describing the binding mechanisms and mapping conformational dynamics on multiple time scales. Importantly, this progress has been associated with specific methodological developments in NMR, for example in exchange techniques, allowing challenging biological systems to be studied at atomic resolution. In general, the level of dynamics observed in IDP complexes does not correlate with binding affinities, demonstrating the intricate relationship between conformational dynamics and IDP regulatory function.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30316104     DOI: 10.1016/j.sbi.2018.09.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  19 in total

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Authors:  Jing Yang; Meng Gao; Junwen Xiong; Zhengding Su; Yongqi Huang
Journal:  Protein Sci       Date:  2019-09-04       Impact factor: 6.725

2.  Kinetic Methods of Deducing Binding Mechanisms Involving Intrinsically Disordered Proteins.

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3.  Role of Backbone Dynamics in Modulating the Interactions of Disordered Ligands with the TAZ1 Domain of the CREB-Binding Protein.

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Journal:  Biochemistry       Date:  2019-02-22       Impact factor: 3.162

Review 4.  Conformational Dynamics of Intrinsically Disordered Proteins Regulate Biomolecular Condensate Chemistry.

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Journal:  Chem Rev       Date:  2022-02-18       Impact factor: 60.622

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Journal:  Solid State Nucl Magn Reson       Date:  2020-01-12       Impact factor: 2.293

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Journal:  Expert Opin Drug Discov       Date:  2020-02-26       Impact factor: 6.098

7.  Measuring radiofrequency fields in NMR spectroscopy using offset-dependent nutation profiles.

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Journal:  J Magn Reson       Date:  2021-07-06       Impact factor: 2.734

8.  Conserved allosteric ensembles in disordered proteins using TROSY/anti-TROSY R2-filtered spectroscopy.

Authors:  Emily M Grasso; Ananya Majumdar; James O Wrabl; Dominique P Frueh; Vincent J Hilser
Journal:  Biophys J       Date:  2021-04-24       Impact factor: 3.699

9.  Intrinsically Disordered Bacterial Polar Organizing Protein Z, PopZ, Interacts with Protein Binding Partners Through an N-terminal Molecular Recognition Feature.

Authors:  Christopher T Nordyke; Yasin M Ahmed; Ryan Z Puterbaugh; Grant R Bowman; Krisztina Varga
Journal:  J Mol Biol       Date:  2020-10-12       Impact factor: 6.151

10.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488

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