Literature DB >> 30311382

Evidence-based assessments of clinical actionability in the context of secondary findings: Updates from ClinGen's Actionability Working Group.

Elizabeth M Webber1, Jessica Ezzell Hunter1, Leslie G Biesecker2, Adam H Buchanan3, Elizabeth V Clarke1, Erin Currey4, Orit Dagan-Rosenfeld5, Kristy Lee6, Noralane M Lindor7, Christa Lese Martin8, Aleksandar Milosavljevic9, Kathleen F Mittendorf1, Kristin R Muessig1, Julianne M O'Daniel6, Ronak Y Patel9, Erin M Ramos10, Shannon Rego11, Anne M Slavotinek12, Nara Lygia M Sobriera13, Meredith A Weaver14, Marc S Williams3, James P Evans6, Katrina A B Goddard1.   

Abstract

The use of genome-scale sequencing allows for identification of genetic findings beyond the original indication for testing (secondary findings). The ClinGen Actionability Working Group's (AWG) protocol for evidence synthesis and semi-quantitative metric scoring evaluates four domains of clinical actionability for potential secondary findings: severity and likelihood of the outcome, and effectiveness and nature of the intervention. As of February 2018, the AWG has scored 127 genes associated with 78 disorders (up-to-date topics/scores are available at www.clinicalgenome.org). Scores across these disorders were assessed to compare genes/disorders recommended for return as secondary findings by the American College of Medical Genetics and Genomics (ACMG) with those not currently recommended. Disorders recommended by the ACMG scored higher on outcome-related domains (severity and likelihood), but not on intervention-related domains (effectiveness and nature of the intervention). Current practices indicate that return of secondary findings will expand beyond those currently recommended by the ACMG. The ClinGen AWG evidence reports and summary scores are not intended as classifications of actionability, rather they provide a resource to aid decision makers as they determine best practices regarding secondary findings. The ClinGen AWG is working with the ACMG Secondary Findings Committee to update future iterations of their secondary findings list. © Published 2018. This article is a U.S. Government work and is in the public domain in the USA.

Entities:  

Keywords:  clinical utility; exome sequencing; genome sequencing; incidental findings; secondary findings

Mesh:

Year:  2018        PMID: 30311382      PMCID: PMC6211797          DOI: 10.1002/humu.23631

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  12 in total

1.  Which Results to Return: Subjective Judgments in Selecting Medically Actionable Genes.

Authors:  Gabriel Lázaro-Muñoz; John M Conley; Arlene M Davis; Anya E R Prince; R Jean Cadigan
Journal:  Genet Test Mol Biomarkers       Date:  2017-02-01

2.  Reporting practices for unsolicited and secondary findings from next-generation sequencing technologies: Perspectives of laboratory personnel.

Authors:  Danya F Vears; Karine Sénécal; Pascal Borry
Journal:  Hum Mutat       Date:  2017-06-06       Impact factor: 4.878

3.  Defining personal utility in genomics: A Delphi study.

Authors:  J N Kohler; E Turbitt; K L Lewis; B S Wilfond; L Jamal; H L Peay; L G Biesecker; B B Biesecker
Journal:  Clin Genet       Date:  2017-04-19       Impact factor: 4.438

4.  Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2016 update (ACMG SF v2.0): a policy statement of the American College of Medical Genetics and Genomics.

Authors:  Sarah S Kalia; Kathy Adelman; Sherri J Bale; Wendy K Chung; Christine Eng; James P Evans; Gail E Herman; Sophia B Hufnagel; Teri E Klein; Bruce R Korf; Kent D McKelvey; Kelly E Ormond; C Sue Richards; Christopher N Vlangos; Michael Watson; Christa L Martin; David T Miller
Journal:  Genet Med       Date:  2016-11-17       Impact factor: 8.822

5.  The clinical application of genome-wide sequencing for monogenic diseases in Canada: Position Statement of the Canadian College of Medical Geneticists.

Authors:  Kym Boycott; Taila Hartley; Shelin Adam; Francois Bernier; Karen Chong; Bridget A Fernandez; Jan M Friedman; Michael T Geraghty; Stacey Hume; Bartha M Knoppers; Anne-Marie Laberge; Jacek Majewski; Roberto Mendoza-Londono; M Stephen Meyn; Jacques L Michaud; Tanya N Nelson; Julie Richer; Bekim Sadikovic; David L Skidmore; Tracy Stockley; Sherry Taylor; Clara van Karnebeek; Ma'n H Zawati; Julie Lauzon; Christine M Armour
Journal:  J Med Genet       Date:  2015-05-07       Impact factor: 6.318

6.  A semiquantitative metric for evaluating clinical actionability of incidental or secondary findings from genome-scale sequencing.

Authors:  Jonathan S Berg; Ann Katherine M Foreman; Julianne M O'Daniel; Jessica K Booker; Lacey Boshe; Timothy Carey; Kristy R Crooks; Brian C Jensen; Eric T Juengst; Kristy Lee; Daniel K Nelson; Bradford C Powell; Cynthia M Powell; Myra I Roche; Cecile Skrzynia; Natasha T Strande; Karen E Weck; Kirk C Wilhelmsen; James P Evans
Journal:  Genet Med       Date:  2015-08-13       Impact factor: 8.822

7.  A survey of current practices for genomic sequencing test interpretation and reporting processes in US laboratories.

Authors:  Julianne M O'Daniel; Heather M McLaughlin; Laura M Amendola; Sherri J Bale; Jonathan S Berg; David Bick; Kevin M Bowling; Elizabeth C Chao; Wendy K Chung; Laura K Conlin; Gregory M Cooper; Soma Das; Joshua L Deignan; Michael O Dorschner; James P Evans; Arezou A Ghazani; Katrina A Goddard; Michele Gornick; Kelly D Farwell Hagman; Tina Hambuch; Madhuri Hegde; Lucia A Hindorff; Ingrid A Holm; Gail P Jarvik; Amy Knight Johnson; Lindsey Mighion; Massimo Morra; Sharon E Plon; Sumit Punj; C Sue Richards; Avni Santani; Brian H Shirts; Nancy B Spinner; Sha Tang; Karen E Weck; Susan M Wolf; Yaping Yang; Heidi L Rehm
Journal:  Genet Med       Date:  2016-11-03       Impact factor: 8.822

8.  Clinical genome sequencing and population preferences for information about 'incidental' findings-From medically actionable genes (MAGs) to patient actionable genes (PAGs).

Authors:  Thomas Ploug; Søren Holm
Journal:  PLoS One       Date:  2017-07-03       Impact factor: 3.240

Review 9.  Stakeholder views on secondary findings in whole-genome and whole-exome sequencing: a systematic review of quantitative and qualitative studies.

Authors:  Michael P Mackley; Benjamin Fletcher; Michael Parker; Hugh Watkins; Elizabeth Ormondroyd
Journal:  Genet Med       Date:  2016-09-01       Impact factor: 8.822

10.  A standardized, evidence-based protocol to assess clinical actionability of genetic disorders associated with genomic variation.

Authors:  Jessica Ezzell Hunter; Stephanie A Irving; Leslie G Biesecker; Adam Buchanan; Brian Jensen; Kristy Lee; Christa Lese Martin; Laura Milko; Kristin Muessig; Annie D Niehaus; Julianne O'Daniel; Margaret A Piper; Erin M Ramos; Sheri D Schully; Alan F Scott; Anne Slavotinek; Nara Sobreira; Natasha Strande; Meredith Weaver; Elizabeth M Webber; Marc S Williams; Jonathan S Berg; James P Evans; Katrina A B Goddard
Journal:  Genet Med       Date:  2016-04-28       Impact factor: 8.822

View more
  13 in total

1.  The Responsibility to Recontact Research Participants after Reinterpretation of Genetic and Genomic Research Results.

Authors:  Yvonne Bombard; Kyle B Brothers; Sara Fitzgerald-Butt; Nanibaa' A Garrison; Leila Jamal; Cynthia A James; Gail P Jarvik; Jennifer B McCormick; Tanya N Nelson; Kelly E Ormond; Heidi L Rehm; Julie Richer; Emmanuelle Souzeau; Jason L Vassy; Jennifer K Wagner; Howard P Levy
Journal:  Am J Hum Genet       Date:  2019-04-04       Impact factor: 11.025

2.  ClinGen's Pediatric Actionability Working Group: Clinical actionability of secondary findings from genome-scale sequencing in children and adolescents.

Authors:  Jessica Ezzell Hunter; Charisma L Jenkins; Joanna E Bulkley; Marian J Gilmore; Kristy Lee; Christine M Pak; Kathleen E Wallace; Adam H Buchanan; Ann Katherine M Foreman; Amanda S Freed; Scott Goehringer; Kandamurugu Manickam; Naomi J L Meeks; Erin M Ramos; Neethu Shah; Robert D Steiner; Sai Lakshmi Subramanian; Tracy Trotter; Elizabeth M Webber; Marc S Williams; Katrina A B Goddard; Bradford C Powell
Journal:  Genet Med       Date:  2022-03-25       Impact factor: 8.864

Review 3.  Long overdue: including adults with brain disorders in precision health initiatives.

Authors:  Brenda M Finucane; Scott M Myers; Christa L Martin; David H Ledbetter
Journal:  Curr Opin Genet Dev       Date:  2020-06-13       Impact factor: 5.578

4.  Recommendations for reporting of secondary findings in clinical exome and genome sequencing, 2021 update: a policy statement of the American College of Medical Genetics and Genomics (ACMG).

Authors:  David T Miller; Kristy Lee; Adam S Gordon; Laura M Amendola; Kathy Adelman; Sherri J Bale; Wendy K Chung; Michael H Gollob; Steven M Harrison; Gail E Herman; Ray E Hershberger; Teri E Klein; Kent McKelvey; C Sue Richards; Christopher N Vlangos; Douglas R Stewart; Michael S Watson; Christa Lese Martin
Journal:  Genet Med       Date:  2021-05-20       Impact factor: 8.822

5.  An ethical framework for genetic counseling in the genomic era.

Authors:  Leila Jamal; Will Schupmann; Benjamin E Berkman
Journal:  J Genet Couns       Date:  2019-12-19       Impact factor: 2.717

6.  Return of genetic and genomic research findings: experience of a pediatric biorepository.

Authors:  Tanya Papaz; Eriskay Liston; Laura Zahavich; Dimitri J Stavropoulos; Rebekah K Jobling; Raymond H Kim; Miriam Reuter; Anastasia Miron; Erwin Oechslin; Tapas Mondal; Lynn Bergin; John F Smythe; Luis Altamirano-Diaz; Jane Lougheed; Roderick Yao; Oyediran Akinrinade; Jeroen Breckpot; Seema Mital
Journal:  BMC Med Genomics       Date:  2019-11-27       Impact factor: 3.063

Review 7.  Case for genome sequencing in infants and children with rare, undiagnosed or genetic diseases.

Authors:  David Bick; Marilyn Jones; Stacie L Taylor; Ryan J Taft; John Belmont
Journal:  J Med Genet       Date:  2019-04-25       Impact factor: 6.318

8.  Genetic testing offer for inherited neuromuscular diseases within the EURO-NMD reference network: A European survey study.

Authors:  Borut Peterlin; Francesca Gualandi; Ales Maver; Serenella Servidei; Silvère M van der Maarel; Francoise Lamy; Alexander Mejat; Teresinha Evangelista; Alessandra Ferlini
Journal:  PLoS One       Date:  2020-09-18       Impact factor: 3.240

9.  Returning actionable genomic results in a research biobank: Analytic validity, clinical implementation, and resource utilization.

Authors:  Carrie L Blout Zawatsky; Nidhi Shah; Kalotina Machini; Emma Perez; Kurt D Christensen; Hana Zouk; Marcie Steeves; Christopher Koch; Melissa Uveges; Janelle Shea; Nina Gold; Joel Krier; Natalie Boutin; Lisa Mahanta; Heidi L Rehm; Scott T Weiss; Elizabeth W Karlson; Jordan W Smoller; Matthew S Lebo; Robert C Green
Journal:  Am J Hum Genet       Date:  2021-11-08       Impact factor: 11.025

Review 10.  A practical approach to the genomics of kidney disorders.

Authors:  Eleanor Hay; Thomas Cullup; Angela Barnicoat
Journal:  Pediatr Nephrol       Date:  2021-03-06       Impact factor: 3.714

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.