Literature DB >> 33675412

A practical approach to the genomics of kidney disorders.

Eleanor Hay1, Thomas Cullup2, Angela Barnicoat3.   

Abstract

Rapid technological advances in genomic testing continue to increase our understanding of the genetic basis of a wide range of kidney disorders. Establishing a molecular diagnosis benefits the individual by bringing an end to what is often a protracted diagnostic odyssey, facilitates accurate reproductive counselling for families and, in the future, is likely to lead to the delivery of more targeted management and surveillance regimens. The selection of the most appropriate testing modality requires an understanding both of the technologies available and of the genetic architecture and heterogeneity of kidney disease. Whilst we are witnessing a far greater diagnostic yield with broader genetic testing, such approaches invariably generate variants of uncertain significance and secondary incidental findings, which are not only difficult to interpret but present ethical challenges with reporting and feeding back to patients and their families. Here, we review the spectrum of nephrogenetic disorders, consider the optimal approach to genetic testing, explore the clinical utility of obtaining a molecular diagnosis, reflect on the challenges of variant interpretation and look to the future of this dynamic field.
© 2021. Crown.

Entities:  

Keywords:  Kidney genomics; Mainstreaming; Next-generation sequencing; Precision medicine; Renal genetic clinic

Mesh:

Year:  2021        PMID: 33675412     DOI: 10.1007/s00467-021-04995-z

Source DB:  PubMed          Journal:  Pediatr Nephrol        ISSN: 0931-041X            Impact factor:   3.714


  57 in total

Review 1.  Genetic testing in renal disease.

Authors:  Detlef Bockenhauer; Alan J Medlar; Emma Ashton; Robert Kleta; Nick Lench
Journal:  Pediatr Nephrol       Date:  2011-05-27       Impact factor: 3.714

2.  Genome-wide polygenic risk predictors for kidney disease.

Authors:  Lili Liu; Krzysztof Kiryluk
Journal:  Nat Rev Nephrol       Date:  2018-12       Impact factor: 28.314

3.  A kidney-disease gene panel allows a comprehensive genetic diagnosis of cystic and glomerular inherited kidney diseases.

Authors:  Gemma Bullich; Andrea Domingo-Gallego; Iván Vargas; Patricia Ruiz; Laura Lorente-Grandoso; Mónica Furlano; Gloria Fraga; Álvaro Madrid; Gema Ariceta; Mar Borregán; Juan Alberto Piñero-Fernández; Lidia Rodríguez-Peña; Maria Juliana Ballesta-Martínez; Isabel Llano-Rivas; Mireia Aguirre Meñica; José Ballarín; David Torrents; Roser Torra; Elisabet Ars
Journal:  Kidney Int       Date:  2018-05-22       Impact factor: 10.612

4.  Copy-number variation associated with congenital anomalies of the kidney and urinary tract.

Authors:  Georgina Caruana; Milagros N Wong; Amanda Walker; Yves Heloury; Nathalie Webb; Lilian Johnstone; Paul A James; Trent Burgess; John F Bertram
Journal:  Pediatr Nephrol       Date:  2014-10-01       Impact factor: 3.714

5.  Common Elements in Rare Kidney Diseases: Conclusions from a Kidney Disease: Improving Global Outcomes (KDIGO) Controversies Conference.

Authors:  Ségolène Aymé; Detlef Bockenhauer; Simon Day; Olivier Devuyst; Lisa M Guay-Woodford; Julie R Ingelfinger; Jon B Klein; Nine V A M Knoers; Ronald D Perrone; Julia Roberts; Franz Schaefer; Vicente E Torres; Michael Cheung; David C Wheeler; Wolfgang C Winkelmayer
Journal:  Kidney Int       Date:  2017-10       Impact factor: 10.612

Review 6.  Familial haematuria: when to consider genetic testing.

Authors:  Judy Taylor; Frances Flinter
Journal:  Arch Dis Child       Date:  2014-04-12       Impact factor: 3.791

Review 7.  Genetic kidney diseases.

Authors:  Friedhelm Hildebrandt
Journal:  Lancet       Date:  2010-04-10       Impact factor: 79.321

Review 8.  Genetic testing in steroid-resistant nephrotic syndrome: why, who, when and how?

Authors:  Rebecca Preston; Helen M Stuart; Rachel Lennon
Journal:  Pediatr Nephrol       Date:  2017-11-27       Impact factor: 3.714

9.  The copy number variation landscape of congenital anomalies of the kidney and urinary tract.

Authors:  Miguel Verbitsky; Rik Westland; Alejandra Perez; Krzysztof Kiryluk; Qingxue Liu; Priya Krithivasan; Adele Mitrotti; David A Fasel; Ekaterina Batourina; Matthew G Sampson; Monica Bodria; Max Werth; Charlly Kao; Jeremiah Martino; Valentina P Capone; Asaf Vivante; Shirlee Shril; Byum Hee Kil; Maddalena Marasà; Jun Y Zhang; Young-Ji Na; Tze Y Lim; Dina Ahram; Patricia L Weng; Erin L Heinzen; Alba Carrea; Giorgio Piaggio; Loreto Gesualdo; Valeria Manca; Giuseppe Masnata; Maddalena Gigante; Daniele Cusi; Claudia Izzi; Francesco Scolari; Joanna A E van Wijk; Marijan Saraga; Domenico Santoro; Giovanni Conti; Pasquale Zamboli; Hope White; Dorota Drozdz; Katarzyna Zachwieja; Monika Miklaszewska; Marcin Tkaczyk; Daria Tomczyk; Anna Krakowska; Przemyslaw Sikora; Tomasz Jarmoliński; Maria K Borszewska-Kornacka; Robert Pawluch; Maria Szczepanska; Piotr Adamczyk; Malgorzata Mizerska-Wasiak; Grazyna Krzemien; Agnieszka Szmigielska; Marcin Zaniew; Mark G Dobson; John M Darlow; Prem Puri; David E Barton; Susan L Furth; Bradley A Warady; Zoran Gucev; Vladimir J Lozanovski; Velibor Tasic; Isabella Pisani; Landino Allegri; Lida M Rodas; Josep M Campistol; Cécile Jeanpierre; Shumyle Alam; Pasquale Casale; Craig S Wong; Fangming Lin; Débora M Miranda; Eduardo A Oliveira; Ana Cristina Simões-E-Silva; Jonathan M Barasch; Brynn Levy; Nan Wu; Friedhelm Hildebrandt; Gian Marco Ghiggeri; Anna Latos-Bielenska; Anna Materna-Kiryluk; Feng Zhang; Hakon Hakonarson; Virginia E Papaioannou; Cathy L Mendelsohn; Ali G Gharavi; Simone Sanna-Cherchi
Journal:  Nat Genet       Date:  2018-12-21       Impact factor: 38.330

10.  Copy-number disorders are a common cause of congenital kidney malformations.

Authors:  Simone Sanna-Cherchi; Krzysztof Kiryluk; Katelyn E Burgess; Monica Bodria; Matthew G Sampson; Dexter Hadley; Shannon N Nees; Miguel Verbitsky; Brittany J Perry; Roel Sterken; Vladimir J Lozanovski; Anna Materna-Kiryluk; Cristina Barlassina; Akshata Kini; Valentina Corbani; Alba Carrea; Danio Somenzi; Corrado Murtas; Nadica Ristoska-Bojkovska; Claudia Izzi; Beatrice Bianco; Marcin Zaniew; Hana Flogelova; Patricia L Weng; Nilgun Kacak; Stefania Giberti; Maddalena Gigante; Adela Arapovic; Kristina Drnasin; Gianluca Caridi; Simona Curioni; Franca Allegri; Anita Ammenti; Stefania Ferretti; Vinicio Goj; Luca Bernardo; Vaidehi Jobanputra; Wendy K Chung; Richard P Lifton; Stephan Sanders; Matthew State; Lorraine N Clark; Marijan Saraga; Sandosh Padmanabhan; Anna F Dominiczak; Tatiana Foroud; Loreto Gesualdo; Zoran Gucev; Landino Allegri; Anna Latos-Bielenska; Daniele Cusi; Francesco Scolari; Velibor Tasic; Hakon Hakonarson; Gian Marco Ghiggeri; Ali G Gharavi
Journal:  Am J Hum Genet       Date:  2012-11-15       Impact factor: 11.025

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  3 in total

1.  Whole-exome sequencing and variant spectrum in children with suspected inherited renal tubular disorder: the East India Tubulopathy Gene Study.

Authors:  Rajiv Sinha; Subal Pradhan; Sushmita Banerjee; Afsana Jahan; Shakil Akhtar; Amitava Pahari; Sumantra Raut; Prince Parakh; Surupa Basu; Priyanka Srivastava; Snehamayee Nayak; S G Thenral; V Ramprasad; Emma Ashton; Detlef Bockenhauer; Kausik Mandal
Journal:  Pediatr Nephrol       Date:  2022-01-10       Impact factor: 3.651

2.  Framework From a Multidisciplinary Approach for Transitioning Variants of Unknown Significance From Clinical Genetic Testing in Kidney Disease to a Definitive Classification.

Authors:  Uyenlinh L Mirshahi; Ahana Bhan; Lotte E Tholen; Brian Fang; Guoli Chen; Bryn Moore; Adam Cook; Prince Mohan Anand; Kashyap Patel; Mary E Haas; Luca A Lotta; Peter Igarashi; Jeroen H F de Baaij; Silvia Ferrè; Joost G J Hoenderop; David J Carey; Alexander R Chang
Journal:  Kidney Int Rep       Date:  2022-07-07

Review 3.  Distinct Mitochondrial Pathologies Caused by Mutations of the Proximal Tubular Enzymes EHHADH and GATM.

Authors:  Anna-Lena Forst; Markus Reichold; Robert Kleta; Richard Warth
Journal:  Front Physiol       Date:  2021-07-19       Impact factor: 4.566

  3 in total

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