| Literature DB >> 30304787 |
Cheng-Shyuan Rau1, Shao-Chun Wu2, Tsu-Hsiang Lu3, Yi-Chan Wu4, Chia-Jung Wu5, Peng-Chen Chien6, Pao-Jen Kuo7, Chia-Wei Lin8, Chia-Wen Tsai9, Ching-Hua Hsieh10.
Abstract
Background: This study aimed at assessing the effect of a low-fat diet (LFD) in obese mice lacking toll⁻like receptors (Tlr) and understanding the expression and regulation of microRNAs during weight reduction.Entities:
Keywords: diet-induced obesity; high-fat diet; low-fat diet; toll-like receptor; weight reduction
Mesh:
Substances:
Year: 2018 PMID: 30304787 PMCID: PMC6213519 DOI: 10.3390/nu10101464
Source DB: PubMed Journal: Nutrients ISSN: 2072-6643 Impact factor: 5.717
Figure 1The curve showing the body weights of (A) C57BL/6 and (B–D) toll–like receptors (Tlr) knockout mice grouped as control, diet-induced obesity (DIO), and diet. (yellow color), * p < 0.05 vs. DIO.
Figure 2(A) The weight of epididymal fat pad, (B) hematoxylin and eosin stained 5 μm section of paraffin-embedded epididymal fat pad of C57BL/6 and Tlr knockout mice in the control and DIO groups, obtained on the twelfth week, (C) size of adipocytes in C57BL/6 and Tlr knockout mice. * p < 0.05 vs. control. p < 0.05 vs. DIO.
Figure 3Unsupervised clustering of the dysregulated miRNAs of C57BL/6 and Tlr knockout mice in the control and DIO groups, obtained on the twelfth week.
Figure 4Expression of dysregulated miRNAs in real-time quantitative reverse transcription polymerase chain reaction (RT–qPCR) in the DIO group of C57BL/6 (A), Tlr5−/− (B), Tlr2−/− (C), and Tlr4−/− (D) mice after weight reduction. * increase expression with p < 0.05 # decrease expression with p < 0.05.
Figure 5Pathway ranking summery of the genes by the dysregulated miRNAs from miRSystem database during weight reduction in C57BL/6 mice. These pathways were annotated according to KEGG.
Figure 6Pathway ranking summery of the genes by the dysregulated miRNAs from miRSystem database during weight reduction in Tlr5−/− mice. These pathways were annotated according to KEGG.
Figure 7Pathway ranking summery of the genes by the dysregulated miRNAs from miRSystem database during weight reduction in Tlr2−/− mice. These pathways were annotated according to KEGG.
Figure 8Pathway ranking summery of the genes by the dysregulated miRNAs from miRSystem database during weight reduction in Tlr4−/− mice. These pathways were annotated according to KEGG.
The top 10 Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways involved in weight reduction in C57BL/6, Tlr5, Tlr2, Tlr4 mice.
| Term | Term ID | Total Genes of the Term | Union Targets in the Term | Mirnas in the Term | Score |
|---|---|---|---|---|---|
|
| |||||
| T CELL RECEPTOR SIGNALING PATHWAY | 4660 | 109 | 7 | 3 | 1.869 |
| AXON GUIDANCE | 4360 | 131 | 10 | 4 | 1.671 |
| FOCAL ADHESION | 4510 | 197 | 11 | 3 | 1.436 |
| CELL ADHESION MOLECULES (CAMS) | 4514 | 149 | 4 | 3 | 1.428 |
| ENDOCYTOSIS | 4144 | 219 | 12 | 4 | 1.416 |
| REGULATION OF ACTIN CYTOSKELETON | 4810 | 215 | 11 | 4 | 1.379 |
| RENAL CELL CARCINOMA | 5211 | 71 | 7 | 2 | 1.133 |
| WNT SIGNALING PATHWAY | 4310 | 153 | 9 | 4 | 1.065 |
| VEGF SIGNALING PATHWAY | 4370 | 76 | 4 | 3 | 0.998 |
| ERBB SIGNALING PATHWAY | 4012 | 87 | 5 | 3 | 0.941 |
|
| |||||
| T CELL RECEPTOR SIGNALING PATHWAY | 4660 | 109 | 2 | 1 | 1.864 |
| AXON GUIDANCE | 4360 | 131 | 2 | 1 | 1.719 |
| CELL ADHESION MOLECULES (CAMS) | 4514 | 149 | 2 | 1 | 1.62 |
| FOCAL ADHESION | 4510 | 197 | 2 | 1 | 1.41 |
| REGULATION OF ACTIN CYTOSKELETON | 4810 | 215 | 2 | 1 | 1.346 |
| ENDOCYTOSIS | 4144 | 219 | 2 | 1 | 1.333 |
| ARGININE AND PROLINE METABOLISM | 330 | 53 | 1 | 1 | 1.087 |
| GLUTATHIONE METABOLISM | 480 | 54 | 1 | 1 | 1.079 |
| GLYCOLYSIS GLUCONEOGENESIS | 10 | 60 | 1 | 1 | 1.038 |
| RENAL CELL CARCINOMA | 5211 | 71 | 1 | 1 | 0.973 |
|
| |||||
| ARGININE AND PROLINE METABOLISM | 330 | 53 | 2 | 2 | 1.171 |
| GLUTATHIONE METABOLISM | 480 | 54 | 2 | 2 | 1.164 |
| T CELL RECEPTOR SIGNALING PATHWAY | 4660 | 109 | 8 | 4 | 1.106 |
| AXON GUIDANCE | 4360 | 131 | 9 | 4 | 1.098 |
| FOCAL ADHESION | 4510 | 197 | 13 | 3 | 1.049 |
| REGULATION OF ACTIN CYTOSKELETON | 4810 | 215 | 14 | 4 | 1.018 |
| ENDOCYTOSIS | 4144 | 219 | 11 | 4 | 0.975 |
| RENAL CELL CARCINOMA | 5211 | 71 | 8 | 3 | 0.888 |
| CELL ADHESION MOLECULES (CAMS) | 4514 | 149 | 7 | 4 | 0.875 |
| WNT SIGNALING PATHWAY | 4310 | 153 | 10 | 4 | 0.749 |
|
| |||||
| ADHERENS JUNCTION | 4520 | 74 | 12 | 4 | 2.242 |
| ARGININE AND PROLINE METABOLISM | 330 | 53 | 2 | 2 | 1.931 |
| GLUTATHIONE METABOLISM | 480 | 54 | 2 | 2 | 1.864 |
| PATHWAYS IN CANCER | 5200 | 323 | 21 | 4 | 1.808 |
| WNT SIGNALING PATHWAY | 4310 | 153 | 14 | 5 | 1.802 |
| AXON GUIDANCE | 4360 | 131 | 11 | 5 | 1.669 |
| REGULATION OF ACTIN CYTOSKELETON | 4810 | 215 | 15 | 5 | 1.504 |
| PROSTATE CANCER | 5215 | 89 | 10 | 3 | 1.363 |
| FOCAL ADHESION | 4510 | 197 | 12 | 4 | 1.265 |
| MAPK SIGNALING PATHWAY | 4010 | 271 | 16 | 5 | 1.22 |