Literature DB >> 30295862

The G-matrix Simulator Family: Software for Research and Teaching.

Adam G Jones1, Reinhard Bürger2, Stevan J Arnold3.   

Abstract

Genetic variation plays a fundamental role in all models of evolution. For phenotypes composed of multiple quantitative traits, genetic variation is best quantified as additive genetic variances and covariances, as these values determine the rate and trajectory of evolution. Additive genetic variances and covariances are often summarized conveniently in the G-matrix, which has additive genetic variances for each trait on the diagonal and additive genetic covariances as its off-diagonal elements. The evolution of the G-matrix is an interesting topic in its own right, because the processes that affect trait means also affect the distribution of standing genetic variation, which, in turn, feeds back to affect the rate of change of trait means. Theoretical studies of the G-matrix have profitably employed simulation-based models because the topic is often too complex to yield meaningful analytical results. Here, we present a series of G-matrix simulation software packages, which have emerged from about 15 years of research on this topic. These simulation models are useful for research and for building intuition regarding the evolution of the G-matrix under a wide variety of circumstances. A tutorial and source code also provide a foundation upon which future models can be built. These tools will be useful to students as well as researchers.

Mesh:

Year:  2018        PMID: 30295862      PMCID: PMC6208455          DOI: 10.1093/jhered/esy054

Source DB:  PubMed          Journal:  J Hered        ISSN: 0022-1503            Impact factor:   2.645


  28 in total

Review 1.  The adaptive landscape as a conceptual bridge between micro- and macroevolution.

Authors:  S J Arnold; M E Pfrender; A G Jones
Journal:  Genetica       Date:  2001       Impact factor: 1.082

2.  Stability of the G-matrix in a population experiencing pleiotropic mutation, stabilizing selection, and genetic drift.

Authors:  Adam G Jones; Stevan J Arnold; Reinhard Bürger
Journal:  Evolution       Date:  2003-08       Impact factor: 3.694

3.  Evolution and stability of the G-matrix on a landscape with a moving optimum.

Authors:  Adam G Jones; Stevan J Arnold; Reinhard Bürger
Journal:  Evolution       Date:  2004-08       Impact factor: 3.694

4.  The G matrix under fluctuating correlational mutation and selection.

Authors:  Liam J Revell
Journal:  Evolution       Date:  2007-08       Impact factor: 3.694

5.  quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation.

Authors:  Samuel Neuenschwander; Frédéric Hospital; Frédéric Guillaume; Jérôme Goudet
Journal:  Bioinformatics       Date:  2008-05-01       Impact factor: 6.937

6.  PHENOTYPIC EVOLUTION, CONSTANT COVARIANCES, AND THE MAINTENANCE OF ADDITIVE VARIANCE.

Authors:  Michael Turelli
Journal:  Evolution       Date:  1988-11       Impact factor: 3.694

7.  THE MEASUREMENT OF SELECTION ON CORRELATED CHARACTERS.

Authors:  Russell Lande; Stevan J Arnold
Journal:  Evolution       Date:  1983-11       Impact factor: 3.694

8.  ADAPTIVE RADIATION ALONG GENETIC LINES OF LEAST RESISTANCE.

Authors:  Dolph Schluter
Journal:  Evolution       Date:  1996-10       Impact factor: 3.694

9.  On the distribution of the mean and variance of a quantitative trait under mutation-selection-drift balance.

Authors:  R Bürger; R Lande
Journal:  Genetics       Date:  1994-11       Impact factor: 4.562

10.  HOW SIMILAR ARE GENETIC CORRELATION STRUCTURES? DATA FROM MICE AND RATS.

Authors:  Luci Ann P Kohn; William R Atchley
Journal:  Evolution       Date:  1988-05       Impact factor: 3.694

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