Literature DB >> 33550645

Thermodynamic stability of hnRNP A1 low complexity domain revealed by high-pressure NMR.

Jeffrey D Levengood1, Jake Peterson2, Blanton S Tolbert1, Julien Roche2.   

Abstract

We have investigated the pressure- and temperature-induced conformational changes associated with the low complexity domain of hnRNP A1, an RNA-binding protein able to phase separate in response to cellular stress. Solution NMR spectra of the hnRNP A1 low-complexity domain fused with protein-G B1 domain were collected from 1 to 2500 bar and from 268 to 290 K. While the GB1 domain shows the typical pressure-induced and cold temperature-induced unfolding expected for small globular domains, the low-complexity domain of hnRNP A1 exhibits unusual pressure and temperature dependences. We observed that the low-complexity domain is pressure sensitive, undergoing a major conformational transition within the prescribed pressure range. Remarkably, this transition has the inverse temperature dependence of a typical folding-unfolding transition. Our results suggest the presence of a low-lying extended and fully solvated state(s) of the low-complexity domain that may play a role in phase separation. This study highlights the exquisite sensitivity of solution NMR spectroscopy to observe subtle conformational changes and illustrates how pressure perturbation can be used to determine the properties of metastable conformational ensembles.
© 2021 The Authors. Proteins: Structure, Function, and Bioinformatics published by Wiley Periodicals LLC.

Entities:  

Keywords:  high-pressure; hnRNPA1; liquid condensates; liquid-liquid phase separation; low complexity

Mesh:

Substances:

Year:  2021        PMID: 33550645      PMCID: PMC9122033          DOI: 10.1002/prot.26058

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  69 in total

1.  Cavities determine the pressure unfolding of proteins.

Authors:  Julien Roche; Jose A Caro; Douglas R Norberto; Philippe Barthe; Christian Roumestand; Jamie L Schlessman; Angel E Garcia; Bertrand E García-Moreno; Catherine A Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-10       Impact factor: 11.205

Review 2.  Idiosyncrasies of hnRNP A1-RNA recognition: Can binding mode influence function.

Authors:  Jeffrey D Levengood; Blanton S Tolbert
Journal:  Semin Cell Dev Biol       Date:  2018-04-09       Impact factor: 7.727

3.  The pressure dependence of hydrophobic interactions is consistent with the observed pressure denaturation of proteins.

Authors:  G Hummer; S Garde; A E García; M E Paulaitis; L R Pratt
Journal:  Proc Natl Acad Sci U S A       Date:  1998-02-17       Impact factor: 11.205

4.  Cavity as a source of conformational fluctuation and high-energy state: high-pressure NMR study of a cavity-enlarged mutant of T4 lysozyme.

Authors:  Akihiro Maeno; Daniel Sindhikara; Fumio Hirata; Renee Otten; Frederick W Dahlquist; Shigeyuki Yokoyama; Kazuyuki Akasaka; Frans A A Mulder; Ryo Kitahara
Journal:  Biophys J       Date:  2015-01-06       Impact factor: 4.033

5.  Molecular Determinants of Temperature Dependence of Protein Volume Change upon Unfolding.

Authors:  Calvin R Chen; George I Makhatadze
Journal:  J Phys Chem B       Date:  2017-08-25       Impact factor: 2.991

6.  High-pressure NMR techniques for the study of protein dynamics, folding and aggregation.

Authors:  Luan M Nguyen; Julien Roche
Journal:  J Magn Reson       Date:  2017-04       Impact factor: 2.229

7.  Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation.

Authors:  Veronica H Ryan; Gregory L Dignon; Gül H Zerze; Charlene V Chabata; Rute Silva; Alexander E Conicella; Joshua Amaya; Kathleen A Burke; Jeetain Mittal; Nicolas L Fawzi
Journal:  Mol Cell       Date:  2018-01-18       Impact factor: 17.970

8.  Remodeling of the folding free energy landscape of staphylococcal nuclease by cavity-creating mutations.

Authors:  Julien Roche; Mariano Dellarole; Jose A Caro; Ewelina Guca; Douglas R Norberto; Yinshan Yang; Angel E Garcia; Christian Roumestand; Bertrand García-Moreno; Catherine A Royer
Journal:  Biochemistry       Date:  2012-11-13       Impact factor: 3.162

9.  Study of protein folding under native conditions by rapidly switching the hydrostatic pressure inside an NMR sample cell.

Authors:  Cyril Charlier; T Reid Alderson; Joseph M Courtney; Jinfa Ying; Philip Anfinrud; Adriaan Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-16       Impact factor: 11.205

Review 10.  Principles and Properties of Stress Granules.

Authors:  David S W Protter; Roy Parker
Journal:  Trends Cell Biol       Date:  2016-06-09       Impact factor: 20.808

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