| Literature DB >> 30279343 |
Gabriel Marc1, Cătălin Araniciu2, Smaranda Dafina Oniga3, Laurian Vlase4, Adrian Pîrnău5, Mihaela Duma6, Luminița Măruțescu7,8, Mariana Carmen Chifiriuc9,10, Ovidiu Oniga11.
Abstract
C. albicans is the most frequently occurring fungal pathogen, and is becoming an increasing public health problem, especially in the context of increased microbial resistance. This opportunistic pathogen is characterized by a versatility explained mainly by its ability to form complex biofilm structures that lead to enhanced virulence and antibiotic resistance. In this context, a review of the known C. albicans biofilm formation inhibitors were performed and a new N-(oxazolylmethyl)-thiazolidinedione scaffold was constructed. 16 new compounds were synthesized and characterized in order to confirm their proposed structures. A general antimicrobial screening against Gram-positive and Gram-negative bacteria, as well as fungi, was performed and revealed that the compounds do not have direct antimicrobial activity. The anti-biofilm activity evaluation confirmed the compounds act as selective inhibitors of C. albicans biofilm formation. In an effort to substantiate this biologic profile, we used in silico investigations which suggest that the compounds could act by binding, and thus obstructing the functions of, the C. albicans Als surface proteins, especially Als1, Als3, Als5 and Als6. Considering the well documented role of Als1 and Als3 in biofilm formation, our new class of compounds that target these proteins could represent a new approach in C. albicans infection prevention and management.Entities:
Keywords: Als; Candida albicans; adhesion; biofilm; invasins; oxazole; thiazolidine-2,4-dione
Mesh:
Substances:
Year: 2018 PMID: 30279343 PMCID: PMC6222719 DOI: 10.3390/molecules23102522
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1The new N-(oxazolylmethyl)-thiazolidinedione scaffold, encompassing various structural moieties present in known anti- biofilm agents.
Figure 2The synthesis of the 4-(chloromethyl)-2-phenyloxazoles intermediates (2a–d).
Figure 3The synthesis of the N-(oxazolylmethyl)-thiazolidinedione (4,5,6,7: a–d).
The antimicrobial activity of the tested compounds expressed as zone diameters of microbial growth inhibition (mm).
| Compound |
|
|
|
|
|
|---|---|---|---|---|---|
| ATCC 5923 | ATCC 29212 | ATCC 27853 | ATCC 25922 | ATCC 10231 | |
|
| 10 | 12 | 12 | 8 | 16 |
|
| 8 | 12 | 12 | 12 | 14 |
|
| 8 | 12 | 12 | 12 | 16 |
|
| 8 | 16 | 12 | 12 | 14 |
|
| 10 | 12 | 10 | 12 | 14 |
|
| 10 | 12 | 12 | 12 | 12 |
|
| 10 | 12 | 12 | 10 | 14 |
|
| 8 | 15 | 10 | 12 | 12 |
|
| 10 | 12 | 8 | 10 | 16 |
|
| 8 | 12 | 10 | 12 | 12 |
|
| 10 | 12 | 12 | 12 | 14 |
|
| 16 | 15 | 10 | 12 | 14 |
|
| 10 | 12 | 8 | 12 | 16 |
|
| 10 | 12 | 8 | 10 | 12 |
|
| 6 | 15 | 12 | 16 | 14 |
|
| 16 | 15 | 12 | 16 | 14 |
|
| - | - | - | - | 24 |
|
| 26 | 26 | 26 | 26 | - |
|
| 0 | 0 | 0 | 0 | 0 |
The minimum inhibitory concentrations MIC (mg mL−1) values of the new compounds against the tested microbial strains.
| Compound |
|
|
|
|
|
|---|---|---|---|---|---|
| ATCC 25923 | ATCC 29212 | ATCC 27853 | ATCC 25922 | ATCC 10231 | |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 1.25 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 1.25 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 1.25 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 1.25 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 2.5 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 0.625 | 0.625 |
|
| 2.5 | 2.5 | 2.5 | 0.625 | 0.625 |
|
| - | - | - | - | 0.004 |
|
| 0.002 | 0.004 | 0.002 | 0.002 | - |
The minimal biofilm eradication concentration MBEC (mg mL−1) values of the final compounds against various microbial strains.
| Compound |
|
|
|
|
|
|---|---|---|---|---|---|
| ATCC 25923 | ATCC 29212 | ATCC 27853 | ATCC 25922 | ATCC 10231 | |
|
| >0.625 | >0.625 | 0.625 | 0.625 | 0.078 |
|
| 0.625 | 0.625 | 0.625 | 0.625 | 0.078 |
|
| 0.625 | 0.312 | 0.625 | 0.312 | 0.078 |
|
| 0.625 | 0.625 | 0.625 | 0.625 | 0.078 |
|
| 0.312 | 0.312 | 0.625 | 0.625 | 0.078 |
|
| >0.625 | >0.625 | 0.625 | 0.625 | 0.078 |
|
| >0.625 | >0.625 | 0.625 | 0.625 | 0.078 |
|
| 0.625 | >0.625 | 0.625 | 0.625 | 0.039 |
|
| 0.625 | 0.625 | 0.625 | 0.625 | 0.078 |
|
| >0.625 | 0.156 | 0.625 | 0.312 | 0.156 |
|
| 0.625 | 0.156 | 0.625 | 0.625 | 0.156 |
|
| >0.625 | >0.625 | 0.625 | 0.625 | >0.625 |
|
| >0.625 | >0.625 | >0.625 | >0.625 | >0.625 |
|
| >0.625 | 0.625 | 0.625 | 0.625 | 0.078 |
|
| >0.625 | 0.625 | 0.625 | 0.312 | 0.078 |
|
| 0.625 | 0.156 | 0.625 | 0.312 | 0.156 |
|
| 0.078 | 0.156 | 0.625 | 0.625 | 0.312 |
Binding energies (kcal/mol) of the tested compounds-Als complexes.
| Compound | ||||||||
|---|---|---|---|---|---|---|---|---|
| Als1 | Als2 | Als3 | Als4 | Als5 | Als6 | Als7 | Als9 | |
|
| −11.21 | −9.65 | −10.55 | −9.34 | −11.26 | −11.33 | −10.37 | −10.30 |
|
| −11.43 | −9.91 | −10.81 | −9.67 | −11.41 | −11.58 | −11.02 | −10.65 |
|
| −11.14 | −9.61 | −10.37 | −9.76 | −11.68 | −11.64 | −10.91 | −10.55 |
|
| −11.05 | −9.82 | −10.08 | −9.35 | −11.73 | −11.64 | −10.83 | −10.12 |
|
| −11.57 | −10.16 | −10.14 | −9.62 | −11.35 | −11.21 | −10.09 | −9.97 |
|
| −11.83 | −9.68 | −10.74 | −9.69 | −11.73 | −11.76 | −10.99 | −10.53 |
|
| −11.51 | −9.52 | −10.60 | −9.77 | −11.69 | −11.74 | −11.19 | −10.36 |
|
| −11.98 | −10.05 | −10.81 | −9.82 | −11.52 | −11.82 | −11.95 | −10.54 |
|
| −10.98 | −9.58 | −10.47 | −9.22 | −11.21 | −11.36 | −10.19 | −9.65 |
|
| −10.87 | −9.82 | −10.47 | −9.69 | −11.70 | −11.17 | −10.83 | −9.77 |
|
| −10.99 | −9.79 | −10.43 | −9.52 | −11.20 | −11.02 | −10.39 | −9.73 |
|
| −10.43 | −9.23 | −9.55 | −9.02 | −10.99 | −11.09 | −9.99 | −9.18 |
|
| −11.05 | −8.99 | −10.05 | −9.31 | −10.78 | −11.11 | −9.90 | −10.01 |
|
| −11.61 | −9.26 | −10.30 | −9.77 | −11.47 | −11.60 | −10.25 | −10.17 |
|
| −11.12 | −9.49 | −10.28 | −9.55 | −11.66 | −11.34 | −10.50 | −10.55 |
|
| −10.99 | −9.25 | −9.16 | −9.42 | −11.03 | −11.30 | −11.24 | −9.26 |
|
| −9.85 | −8.03 | −8.26 | −7.97 | −7.87 | −8.57 | −7.85 | −9.32 |
Binding affinity average comparison between different structural subseries.
| Compounds | Series Type | Binding Affinity (kcal/mol) | |
|---|---|---|---|
| Average | Standard Deviation | ||
|
| 2-phenyloxazole | −10.37 | 0.147 |
|
| 2-(p-tolyl)oxazole | −10.69 | |
|
| 2-(4-chlorophenyl)oxazole | −10.61 | |
|
| 2-(4-nitrophenyl)oxazole | −10.45 | |
|
| 4-hydroxy-phenyl | −10.65 | 0.240 |
|
| 3-hydroxy-phenyl | −10.81 | |
|
| 2-hydroxy-phenyl | −10.30 | |
|
| 4-hydroxy-3-methoxybenzylidene | −10.37 | |
The predicted inhibition constants Ki (nM) for the tested compounds-Als complexes.
| Compound | Als1 | Als2 | Als3 | Als4 | Als5 | Als6 | Als7 | Als9 |
|---|---|---|---|---|---|---|---|---|
|
| 6.07 | 84.42 | 18.48 | 142.46 | 5.58 | 4.95 | 25.04 | 28.18 |
|
| 4.18 | 54.43 | 11.92 | 81.62 | 4.33 | 3.25 | 8.36 | 15.61 |
|
| 6.83 | 90.32 | 25.04 | 70.12 | 2.74 | 2.94 | 10.07 | 18.48 |
|
| 7.95 | 63.36 | 40.86 | 140.07 | 2.52 | 2.94 | 11.52 | 38.19 |
|
| 3.30 | 35.70 | 36.92 | 88.81 | 4.79 | 6.07 | 40.17 | 49.19 |
|
| 2.13 | 80.25 | 13.41 | 78.91 | 2.52 | 2.40 | 8.79 | 19.12 |
|
| 3.66 | 105.13 | 16.99 | 68.94 | 2.70 | 2.48 | 6.28 | 25.47 |
|
| 1.65 | 42.98 | 11.92 | 63.36 | 3.60 | 2.17 | 1.74 | 18.80 |
|
| 8.94 | 95.01 | 21.15 | 174.44 | 6.07 | 4.71 | 33.93 | 84.42 |
|
| 10.77 | 63.36 | 21.15 | 78.91 | 2.65 | 6.49 | 11.52 | 68.94 |
|
| 8.79 | 66.65 | 22.63 | 105.13 | 6.17 | 8.36 | 24.21 | 73.76 |
|
| 22.63 | 171.52 | 99.94 | 244.48 | 8.79 | 7.43 | 47.56 | 186.62 |
|
| 7.95 | 257.18 | 42.98 | 149.86 | 12.54 | 7.18 | 55.36 | 45.98 |
|
| 3.09 | 163.05 | 28.18 | 68.94 | 3.91 | 3.14 | 30.67 | 35.10 |
|
| 7.06 | 110.59 | 29.15 | 99.94 | 2.84 | 4.87 | 20.11 | 18.48 |
|
| 8.79 | 165.83 | 193.03 | 124.46 | 8.22 | 5.21 | 5.77 | 163.05 |
|
| 60.23 | 1299.95 | 881.73 | 1438.49 | 1702.98 | 522.52 | 1761.44 | 147.35 |
Figure 4Compound 5d docked in the binding site of the C. albicans Als1 surface protein.
Figure 5Compound 5d docked in the binding site of the C. albicans Als3 surface protein.
Figure 6Sequence alignment for the Als targets.
The similarity matrix of the primary structures of different Als.
| Als1 | Als2 | Als3 | Als4 | Als5 | Als6 | Als7 | Als9 | |
|---|---|---|---|---|---|---|---|---|
|
| 100.00 | 74.16 | 82.61 | 62.54 | 81.27 | 64.55 | 46.58 | 68.46 |
|
| 74.16 | 100.00 | 74.16 | 60.54 | 73.46 | 61.76 | 45.36 | 64.94 |
|
| 82.61 | 74.16 | 100.00 | 63.21 | 77.59 | 63.55 | 47.95 | 68.56 |
|
| 62.54 | 60.54 | 63.21 | 100.00 | 58.33 | 56.67 | 44.18 | 64.21 |
|
| 81.27 | 73.46 | 77.59 | 58.33 | 100.00 | 61.24 | 43.49 | 65.92 |
|
| 64.55 | 61.76 | 63.55 | 56.67 | 61.24 | 100.00 | 50.00 | 61.76 |
|
| 46.58 | 45.36 | 47.95 | 44.18 | 43.49 | 50.00 | 100.00 | 46.39 |
|
| 68.46 | 64.94 | 68.56 | 64.21 | 65.92 | 61.76 | 46.39 | 100.00 |
Figure 7Sequence homology of Als proteins. The branch support values are depicted in red, while the branch length values are depicted in blue.
The Als’ binding pocket characteristics.
| Parameter | Als1 | Als2 | Als3 | Als4 | Als5 | Als6 | Als7 | Als9 |
|---|---|---|---|---|---|---|---|---|
|
| 1510.21 | 1382.53 | 1496.96 | 1447.10 | 1640.26 | 1142.21 | 1218.05 | 1488.19 |
|
| 1766.14 | 1551.69 | 1603.54 | 1539.99 | 1963.5 | 1168.52 | 1583.70 | 1473.79 |
|
| 39 | 40 | 36 | 31 | 43 | 30 | 33 | 29 |
|
| 107 | 94 | 111 | 86 | 131 | 61 | 92 | 102 |
|
| 74 | 62 | 61 | 70 | 82 | 56 | 95 | 79 |
|
| 34% | 31% | 29% | 37% | 32% | 38% | 43% | 38% |
|
| 36% | 36% | 41% | 41% | 35% | 42% | 35% | 42% |
|
| 52% | 45% | 48% | 45% | 51% | 46% | 42% | 38% |
|
| 6% | 9% | 5% | 7% | 9% | 8% | 10% | 6% |
|
| 6% | 9% | 5% | 7% | 5% | 4% | 13% | 14% |
Target macromolecular structures retrieved from Protein Data Bank (PDB).
| Target | PDB Entry Code | Cartesian Coordinates of the Search Space Center | ||
|---|---|---|---|---|
| x | y | Z | ||
| Als3 | 4LEE | 21.248 | 0.862 | 51.807 |
| Als9 | 2YLH | −7.88 | 24.311 | −10.076 |
Structures built by homology modeling (not available from Protein Data Bank).
| Target | FASTA Amino Acid Sequence | PDB Entry Template | Identity (%) | Cartesian Coordinates of the Search Space Center | ||
|---|---|---|---|---|---|---|
| x | y | z | ||||
| Als1 | Q5A874 | 4LEE | 82.43 | 21.248 | 0.862 | 51.807 |
| Als2 | Q9URQ0 | 4LEE | 73.46 | 21.248 | 0.862 | 51.807 |
| Als4 | O7466Q | 2Y7M | 65.03 | 30.540 | 53.025 | 12.815 |
| Als5 | Q5A8T7 | 4LEE | 77.64 | 21.248 | 0.862 | 51.807 |
| Als6 | Q5A2Z7 | 2YLH | 62.42 | −7.88 | 24.311 | −10.076 |
| Als7 | Q5A312 | 4LEE | 47.26 | 21.248 | 0.862 | 51.807 |