Literature DB >> 22628523

DoGSiteScorer: a web server for automatic binding site prediction, analysis and druggability assessment.

Andrea Volkamer1, Daniel Kuhn, Friedrich Rippmann, Matthias Rarey.   

Abstract

MOTIVATION: Many drug discovery projects fail because the underlying target is finally found to be undruggable. Progress in structure elucidation of proteins now opens up a route to automatic structure-based target assessment. DoGSiteScorer is a newly developed automatic tool combining pocket prediction, characterization and druggability estimation and is now available through a web server. AVAILABILITY: The DoGSiteScorer web server is freely available for academic use at http://dogsite.zbh.uni-hamburg.de CONTACT: rarey@zbh.uni-hamburg.de.

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Year:  2012        PMID: 22628523     DOI: 10.1093/bioinformatics/bts310

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  102 in total

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2.  Origin of high stereocontrol in olefin cyclopropanation catalyzed by an engineered carbene transferase.

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3.  Harnessing Human Microphysiology Systems as Key Experimental Models for Quantitative Systems Pharmacology.

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Journal:  Handb Exp Pharmacol       Date:  2019

4.  The acidic domain is a unique structural feature of the splicing factor SYNCRIP.

Authors:  Christine Beuck; James R Williamson; Kurt Wüthrich; Pedro Serrano
Journal:  Protein Sci       Date:  2016-05-17       Impact factor: 6.725

5.  Type II Binders Targeting the "GLR-Out" Conformation of the Pseudokinase STRADα.

Authors:  Ryan H B Smith; Zaigham M Khan; Peter Man-Un Ung; Alex P Scopton; Lisa Silber; Seshat M Mack; Alexander M Real; Avner Schlessinger; Arvin C Dar
Journal:  Biochemistry       Date:  2021-01-13       Impact factor: 3.162

6.  Epigenetic Modulators as Potential Multi-targeted Drugs Against Hedgehog Pathway for Treatment of Cancer.

Authors:  Anshika N Singh; Neeti Sharma
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7.  A comparative proteomic approach using metabolic pathways for the identification of potential drug targets against Helicobacter pylori.

Authors:  Reaz Uddin; Waqar Khalil
Journal:  Genes Genomics       Date:  2020-03-19       Impact factor: 1.839

8.  Inhibition of the human respiratory syncytial virus small hydrophobic protein and structural variations in a bicelle environment.

Authors:  Yan Li; Janet To; Carmina Verdià-Baguena; Silvia Dossena; Wahyu Surya; Mei Huang; Markus Paulmichl; Ding Xiang Liu; Vicente M Aguilella; Jaume Torres
Journal:  J Virol       Date:  2014-08-06       Impact factor: 5.103

9.  New Frontiers in Druggability.

Authors:  Dima Kozakov; David R Hall; Raeanne L Napoleon; Christine Yueh; Adrian Whitty; Sandor Vajda
Journal:  J Med Chem       Date:  2015-08-11       Impact factor: 7.446

10.  Druggability of Coronary Artery Disease Risk Loci.

Authors:  Vinicius Tragante; Daiane Hemerich; Mohammad Alshabeeb; Ingrid Brænne; Harri Lempiäinen; Riyaz S Patel; Hester M den Ruijter; Michael R Barnes; Jason H Moore; Heribert Schunkert; Jeanette Erdmann; Folkert W Asselbergs
Journal:  Circ Genom Precis Med       Date:  2018-08
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