Literature DB >> 30277399

Probing Protein Dynamics Using Multifield Variable Temperature NMR Relaxation and Molecular Dynamics Simulation.

Baptiste Busi1, Jayasubba Reddy Yarava1, Albert Hofstetter1, Nicola Salvi2, Diane Cala-De Paepe3, Józef R Lewandowski4, Martin Blackledge2, Lyndon Emsley1.   

Abstract

Understanding the interplay between protein function and dynamics is currently one of the fundamental challenges of physical biology. Recently, a method using variable temperature solid-state nuclear magnetic resonance relaxation measurements has been proposed for the simultaneous measurement of 12 different activation energies reporting on distinct dynamic modes in the protein GB1. Here, we extend this approach to measure relaxation at multiple magnetic field strengths, allowing us to better constrain the motional models and to simultaneously evaluate the robustness and physical basis of the method. The data reveal backbone and side-chain motions, exhibiting low- and high-energy modes with temperature coefficients around 5 and 25 kJ·mol-1. The results are compared to variable temperature molecular dynamics simulation of the crystal lattice, providing further support for the interpretation of the experimental data in terms of molecular motion.

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Year:  2018        PMID: 30277399     DOI: 10.1021/acs.jpcb.8b08578

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Aromatic Ring Dynamics, Thermal Activation, and Transient Conformations of a 468 kDa Enzyme by Specific 1H-13C Labeling and Fast Magic-Angle Spinning NMR.

Authors:  Diego F Gauto; Pavel Macek; Alessandro Barducci; Hugo Fraga; Audrey Hessel; Tsutomu Terauchi; David Gajan; Yohei Miyanoiri; Jerome Boisbouvier; Roman Lichtenecker; Masatsune Kainosho; Paul Schanda
Journal:  J Am Chem Soc       Date:  2019-07-05       Impact factor: 15.419

2.  77Se NMR Probes the Protein Environment of Selenomethionine.

Authors:  Qingqing Chen; Shiping Xu; Xingyu Lu; Michael V Boeri; Yuliya Pepelyayeva; Elizabeth L Diaz; Sunil-Datta Soni; Marc Allaire; Martin B Forstner; Brian J Bahnson; Sharon Rozovsky
Journal:  J Phys Chem B       Date:  2020-01-07       Impact factor: 2.991

3.  Structural Dynamics by NMR in the Solid State: The Unified MOMD Perspective Applied to Organic Frameworks with Interlocked Molecules.

Authors:  Eva Meirovitch; Zhichun Liang; Jack H Freed
Journal:  J Phys Chem B       Date:  2020-07-14       Impact factor: 2.991

Review 4.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

5.  Dipolar Order Parameters in Large Systems With Fast Spinning.

Authors:  W Trent Franks; Ben P Tatman; Jonah Trenouth; Józef R Lewandowski
Journal:  Front Mol Biosci       Date:  2021-12-09
  5 in total

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