| Literature DB >> 30271922 |
Emma A D Clifton1, John R B Perry2, Fumiaki Imamura2, Luca A Lotta2, Soren Brage2, Nita G Forouhi2, Simon J Griffin2,3, Nicholas J Wareham2, Ken K Ong2, Felix R Day4.
Abstract
Risk-taking propensity is a trait of significant public health relevance but few specific genetic factors are known. Here we perform a genome-wide association study of self-reported risk-taking propensity among 436,236 white European UK Biobank study participants. We identify genome-wide associations at 26 loci (P < 5 × 10-8), 24 of which are novel, implicating genes enriched in the GABA and GABA receptor pathways. Modelling the relationship between risk-taking propensity and body mass index (BMI) using Mendelian randomisation shows a positive association (0.25 approximate SDs of BMI (SE: 0.06); P = 6.7 × 10-5). The impact of individual SNPs is heterogeneous, indicating a complex relationship arising from multiple shared pathways. We identify positive genetic correlations between risk-taking and waist-hip ratio, childhood obesity, ever smoking, attention-deficit hyperactivity disorder, bipolar disorder and schizophrenia, alongside a negative correlation with women's age at first birth. These findings highlight that behavioural pathways involved in risk-taking propensity may play a role in obesity, smoking and psychiatric disorders.Entities:
Year: 2018 PMID: 30271922 PMCID: PMC6123697 DOI: 10.1038/s42003-018-0042-6
Source DB: PubMed Journal: Commun Biol ISSN: 2399-3642
Descriptive information by UKB participants’ answers to the question: Would you describe yourself as someone who takes risks?
| Yes ( | No ( | ||
|---|---|---|---|
| Female | 39.5% | 59.2% | <1 × 10−200 |
| Age | 55.8 (8.2) | 57.1 (7.9) | <1 × 10−200 |
| BMI (kg/m2)a | 27.7 (4.7) | 27.3 (4.8) | 3.1 × 10−81 |
| Age at first birthb | 25.2 (4.9) | 25.4 (4.5) | 1.1 × 10−20 |
| Ever smokeda | 53.3% | 43.3% | <1 × 10−200 |
| Alcohol frequency (self-report)a | Median—‘three or four times a week’ | Median—‘once or twice a week’ | <1 × 10−200 |
| Drug addiction (self-report)a | 0.33% | 0.11% | 4.4 × 10−32 |
| Any eating disorder (self-report)a | 0.08% | 0.07% | 0.22 |
| Schizophrenia (self-report)a | 0.12% | 0.11% | 0.17 |
| Depression (self-report)a | 6.18% | 5.96% | 2.3 × 10−14 |
| Age completed educationa | 16.7 (2.4) | 16.6 (2.1) | 6.5 × 10−6 |
BMI body mass index
Values are mean (SD) or %, except for alcohol frequency where the responses were on a six point scale ranging from ‘Never’ to ‘Daily or almost daily’
a Age- and sex-adjusted models used to calculate the P value in a regression model—linear for continuous phenotypes, logistic for binary phenotypes and ordered categorical for alcohol frequency
b Data for women only, the P value is from a model with only age adjustm`ent
Fig. 1Manhattan plot of the GWAS of risk-taking propensity . The plot illustrates the results of the GWAS of 436,236 participants of white European descent in UK Biobank. Negative log-transformed P values for each SNP (y axis) are plotted by chromosomal position (x axis). The red-dashed line indicates the threshold for statistical significance (P = 5 × 10−8). The blue dots indicate SNPs within a 1-Mb region of a genome-wide significant signal
Twenty-six genome-wide significant loci for risk-taking propensity from the UK Biobank study
| Variant | Chr | Pos | Implicated gene | SNP location | Allelesa | Allele freq.b | OR | 95% CI | Gene-associated disorders and phenotypes | |
|---|---|---|---|---|---|---|---|---|---|---|
| rs6762267 | 3 | 85513115 |
| Intronic | C/A | 0.38 | 1.049 | 1.041–1.058 | 6.60 × 10−31 | — |
| rs727644 | 7 | 114109349 |
| Intronic | G/A | 0.60 | 1.031 | 1.023–1.040 | 4.00 × 10−14 | Speech and language disorder 1 |
| rs62519827 | 8 | 65481947 |
| Intergenic | T/C | 0.89 | 1.042 | 1.029–1.055 | 6.00 × 10−11 | Spastic paraplegia |
| rs9841382 | 3 | 181408124 |
| Intronic | C/T | 0.14 | 1.038 | 1.026–1.049 | 7.10 × 10−11 | CNS abnormalities; development delay |
| rs58560561 | 1 | 243537729 |
| Intronic | G/T | 0.65 | 1.028 | 1.019–1.036 | 7.20 × 10−11 | Educational attainment; Bardet–Biedl syndrome |
| rs992493 | 4 | 106180264 |
| Intronic | T/C | 0.19 | 1.033 | 1.023–1.043 | 2.50 × 10−10 | — |
| rs6923811 | 6 | 27289776 |
| Intergenic | T/C | 0.68 | 1.027 | 1.019–1.036 | 3.90 × 10−10 | Autistic spectrum disorder |
| rs7817124 | 8 | 81404008 |
| Intronic | C/G | 0.24 | 1.030 | 1.020–1.039 | 6.10 × 10−10 | — |
| rs4801000 | 18 | 53456943 |
| Intergenic | G/A | 0.34 | 1.025 | 1.017–1.034 | 3.40 × 10−9 | Schizophrenia |
| rs4653015 | 1 | 33776431 |
| Intergenic | T/C | 0.26 | 1.027 | 1.018–1.037 | 3.80 × 10−9 | — |
| rs12476923 | 2 | 145830053 |
| Intronic | A/C | 0.34 | 1.025 | 1.017–1.034 | 4.70 × 10−9 | — |
| rs283914 | 3 | 17330649 |
| Intronic | T/C | 0.53 | 1.024 | 1.016–1.032 | 5.30 × 10−9 | Schizophrenia |
| rs4233093 | 1 | 73446245 |
| Intergenic | A/G | 0.52 | 1.024 | 1.016–1.032 | 5.30 × 10−9 | Neuronal growth |
| rs7829912 | 8 | 33479228 |
| Intergenic | T/C | 0.56 | 1.024 | 1.016–1.032 | 5.90 × 10−9 | — |
| rs3117340 | 6 | 29210596 |
| Intergenic | G/T | 0.62 | 1.024 | 1.016–1.033 | 7.00 × 10−9 | Autistic spectrum disorder; sensory experience |
| rs1381287 | 14 | 98597552 |
| Intergenic | T/C | 0.46 | 1.023 | 1.015–1.032 | 9.90 × 10−9 | — |
| rs28520003 | 22 | 46411969 |
| Intergenic | G/A | 0.69 | 1.025 | 1.016–1.034 | 1.10 × 10−8 | — |
| rs12115650 | 9 | 126367705 |
| Intronic | G/A | 0.72 | 1.026 | 1.017–1.035 | 1.50 × 10−8 | — |
| rs11226319 | 11 | 104221573 |
| Intergenic | A/G | 0.16 | 1.032 | 1.021–1.043 | 1.50 × 10−8 | Neocortical development |
| rs1358391 | 7 | 115111838 |
| Intergenic | G/T | 0.51 | 1.023 | 1.015–1.031 | 1.50 × 10−8 | — |
| rs12617392 | 2 | 27336827 |
| Intronic | C/A | 0.56 | 1.023 | 1.015–1.031 | 1.80 × 10−8 | — |
| rs542883 | 2 | 45143382 |
| Intergenic | C/G | 0.56 | 1.023 | 1.015–1.031 | 2.20 × 10−8 | Holoprosencephaly |
| rs10823791 | 10 | 73338334 |
| Intronic | T/A | 0.40 | 1.023 | 1.015–1.031 | 3.60 × 10−8 | Usher syndrome; profound deafness |
| rs34905321 | 6 | 109131107 |
| Intergenic | T/C | 0.57 | 1.022 | 1.014–1.031 | 3.90 × 10−8 | — |
| rs891124 | 16 | 71440756 |
| Intergenic | T/C | 0.71 | 1.024 | 1.016–1.033 | 4.10 × 10−8 | — |
| rs35914833 | 14 | 94182383 |
| Intergenic | T/C | 0.68 | 1.024 | 1.015–1.033 | 5.00 × 10−8 | — |
OR odds ratio, N nearest gene, E eQTL, M missense
a Effect allele/other allele
b Effect allele frequency
Associations between the four risk-taking loci that were genome-wide significant signals for BMI and diet-related traits
| Variant | Implicated gene | BMI | TV snacking | Home-cooked meals | Skipping breakfast | Energy (kcal/day) | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Beta (SE) | Beta (SE) | Beta (SE) | Beta (SE) | Beta (SE) | |||||||
| rs891124 |
| 0.01 (0.002) | 3.5 × 10−10 | 0.12 (0.05) | 0.02* | 0.04 (0.03) | 0.21 | 0.01 (0.03) | 0.86 | 3.86 (11.0) | 0.73 |
| rs35914833 |
| 0.02 (0.002) | 5.3 × 10−14 | −0.05 (0.05) | 0.34 | −0.03 (0.03) | 0.33 | −0.04 (0.03) | 0.20 | 30.3 (11.0) | 0.01* |
| rs6762267 |
| 0.02 (0.002) | 1.7 × 10−15 | 0.09 (0.05) | 0.07 | 0.02 (0.03) | 0.45 | −0.03 (0.03) | 0.36 | 12.3 (10.2) | 0.23 |
| rs7817124 |
| −0.01 (0.002) | 1.8 × 10−9 | 0.09 (0.06) | 0.10 | −0.03 (0.03) | 0.36 | 0.08 (0.03) | 0.02* | 12.4 (11.5) | 0.28 |
SNPs were aligned to the risk-taking propensity-increasing allele. Effect estimates (beta and SE) were derived from linear or logistic regressions of the variant to the named trait, adjusted for age and sex. BMI was a continuous outcome standardised within the BMI meta-analysis. TV snacking was coded: 0 never/rarely; 1 occasionally/ usually/ always; skipping breakfast was coded: 0 skips breakfast <2 times a week; 1 skips breakfast ≥2 times a week; home-cooked food was coded: 0:>5 meals a week home-cooked, 1:<5 meals a week are home-cooked
*Nominally significant (P < 0.05)
Mendelian randomisation analyses of BMI to risk-taking and risk-taking to BMI
| Analysis | Beta (SE) | |
|---|---|---|
|
| ||
| Conventional MR (IVW) | 0.251 (0.063) | 6.7 × 10−5 |
| MR Egger | 0.885 (0.985) | 0.37 |
| Weighted median MR | 0.091 (0.121) | 0.45 |
|
| ||
| Conventional MR (IVW) | 0.004 (0.004) | 0.23 |
| MR Egger | 0.002 (0.017) | 0.88 |
| Weighted median MR | −0.008 (0.007) | 0.26 |
|
| Not applicable | 9.9 × 10−8 |
BMI body mass index, MR mendelian randomisation, IVW inverse-weighted variance
MR Egger intercept was not significant
Fig. 2Effect of genome-wide significant SNPs for risk-taking on BMI. Each data point represents one of the 26 risk-associated SNPs. The SNP-specific MR estimate for the association of risk-taking with BMI (x axis) is plotted against the SE (y axis). The summary estimate is marked by the solid black line. The grey-dotted lines, originating from the summary estimate, represent 95% confidence limits. The red-dotted line indicates the null
Polygenic risk score for risk-taking propensity (created using summary statistics from UKB) related to diet and eating behaviours in the Fenland study
| Variable | Total ( | Effect (95% CI) |
| |
|---|---|---|---|---|
|
| ||||
| Energy (kcal/day) | 8981 | 803.5 (140.1, 1466.8) | 0.042 | 0.02* |
| Total fat (g/day)a | 8981 | 0.52 (0.12, 0.92) | 0.042 | 0.01* |
| Fruit and vegetables (g/day)a | 8844 | 0.46 (−0.07, 0.99) | 0.044 | 0.09 |
| Protein (g/day)a | 8981 | 0.36 (0.06, 0.66) | 0.010 | 0.02* |
| Fibre (g/day)a | 8981 | 0.28 (−0.10, 0.66) | 0.005 | 0.15 |
| Carbohydrates (g/day)a | 8981 | 0.25 (−0.10, 0.60) | 0.028 | 0.16 |
|
| ||||
| Emotional eating | 1646 | 94.6 (35.7, 153.6) | 0.007 | 0.002** |
| Cognitive restraint | 1646 | −2.62 (−48.0, 42.7) | 0.005 | 0.91 |
| Uncontrolled eating | 1646 | 32.0 (−9.3, 73.3) | 0.019 | 0.13 |
|
| ||||
| Emotional eating | 1869 | −21.2 (−82.7, 40.6) | 0.002 | 0.50 |
| Cognitive restraint | 1869 | −21.2 (−63.3, 20.8) | 0.005 | 0.32 |
| Uncontrolled eating | 1869 | 14.8 (−24.0, 53.6) | 0.013 | 0.45 |
|
|
| |||
| TV snackingb | 4414 | 1.03 (0.99, 1.06) | — | 0.46 |
| Skipping breakfastb | 11,441 | 1.05 (1.02, 1.07) | — | 0.03* |
| Home-cooked foodb | 11,439 | 0.99 (0.97, 1.01) | — | 0.59 |
All models were linear or logistic regressions of the PRS for risk-taking to the variable, adjusted for age and sex. Sex-stratified models were only adjusted for age
TV snacking was coded: 0 never/rarely; 1 occasionally /usually/always; skipping breakfast was coded: 0 < 2 times a week; 1 ≥ 2 times a week; home-cooked food was coded: 0; > 5 meals a week home-cooked, 1; < 5 meals a week are home-cooked
*Nominally significant (P < 0.05)
**Bonferroni significant after adjustment for 15 tests (P < 0.003)
a Log-transformed
b Logistic regression
Fig. 3Tissue enrichment for risk-taking associated loci. a When tissues and cells are grouped together, GTEx analysis shows that genes within risk-taking loci are enriched for expression in the central nervous system (CNS) and hematopoietic/immune system. The dotted line indicates the threshold for statistically significant enrichment, established using the Bonferroni-corrected P value of partitioned heritability calculated by stratified LD score regression. b GTEx analysis shows enriched expression of genes within risk-taking loci in particular brain regions. The dotted line indicates the threshold for statistically significant enrichment, established using the Bonferroni-corrected P value of partitioned heritability calculated by stratified LD score regression
Fig. 4Genetic correlations for risk-taking. Whole-genome LD score regression tested genome-wide SNP associations for risk-taking against similar data for 12 BMI-related traits. Error bars show the 95% confidence intervals for these estimates. Stars indicate statistically significant associations, after adjustment for multiple testing. After correction for multiple testing, WHR and childhood obesity, age at first birth, ever versus never smoking, ADHD, bipolar disorder and schizophrenia remained significant