| Literature DB >> 30260979 |
Kenneth Bauters1,2, Paul Goetghebeur2, Pieter Asselman1,2, Kenny Meganck2,3, Isabel Larridon2,4.
Abstract
Scleria subgen. Hypoporum (Cyperaceae), with 68 species, is the second largest subgenus in Scleria. Species of this pantropically distributed subgenus generally occur in seasonally or permanently wet grasslands or on shallow soils over sandstone or lateritic outcrops, less often they can be found in (open) woodlands. Previous studies established the monophyly of the subgenus, but the relationships between the species remained uncertain. In this study, DNA sequence data of 61 taxa of Scleria subgen. Hypoporum, where possible represented by multiple accessions from across their distributional range, were obtained for four molecular markers: the coding chloroplast marker ndhF, the chloroplast intron rps16 and the nuclear ribosomal regions ETS and ITS. Phylogenetic trees were constructed using Bayesian inference and maximum likelihood approaches. A species tree was constructed to summarise the results. The results indicate the existence of three sections: the monotypic, pantropically occurring, Scleria sect. Lithospermae, a new section from central and south America containing two species, and Scleria sect. Hypoporum, also pantropically distributed, containing the remainder of the species of the subgenus. Relationships in the latter section are not fully resolved. However, three or four different clades can be distinguished supported by some morphological characters. Our results indicate at least six new species in Scleria sect. Hypoporum. The new section and species are described in a taxonomical treatment. Their morphology is compared with (morphologically) closely related species.Entities:
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Year: 2018 PMID: 30260979 PMCID: PMC6160245 DOI: 10.1371/journal.pone.0203478
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Phylogenetic summary of the genus Scleria.
Based on Bayesian analysis of Bauters et al. [1]. Posterior probabilities are displayed above the branches. Subgenera are displayed on the tree.
Primers used in this study.
Primer combinations used: ITSA(ITSsef17)–ITS4, internal: ITSA(ITSsef17)–ITS-C, ITS-D–ITS4; ETS1f–18SR.
| Primer name | Primer sequence (5’–3’) | Reference |
|---|---|---|
| ITS | ||
| ITS-A | Blattner & al. [ | |
| ITSsef17 | Sun & al. [ | |
| ITS-D | Blattner & al. [ | |
| ITS-C | Blattner & al. [ | |
| ITS4 | White & al. [ | |
| ETS | ||
| ETS1f | Starr et al. [ | |
| 18SR | Starr et al. [ | |
| | Hinchliff & al. [ | |
| | Bauters & al. [ | |
| | Bauters & al. [ | |
| | Hinchlif & al. [ | |
| | Oxelman & al. [ | |
| | Oxelman & al. [ | |
| | Bauters & al. [ | |
| | Bauters & al. [ |
Fig 2Summary tree of concatenated ETS and ITS analysis.
50% majority rule consensus tree based on concatenated nuclear dataset. Posterior probabilities obtained from BI indicated on the respective branches when equal or higher than 0.90, bootstrap values equal or higher than 75% displayed under the branches. Branches in red indicate differences with the results of the chloroplast dataset. Taxa displayed in green represent samples absent from the chloroplast analyses.
Fig 3Summary tree of concatenated ndhF and rps16 analysis.
50% majority rule consensus tree based on concatenated chloroplast dataset. Posterior probabilities obtained from BI indicated on the respective branches when equal or higher than 0.90, bootstrap values equal or higher than 75% displayed under the branches. Branches in red indicate differences with the results of the chloroplast dataset. Taxa displayed in green represent samples absent from the chloroplast analyses.
Fig 4Estimated species tree with coalescent approaches using two nuclear markers, ETS and ITS and two chloroplast markers, ndhF and rps16.
Only posterior probabilities above 0.90 are displayed above the branches.
Comparisson between S. ankaratrensis, S. hirtella and S. tricholepis.
| Character | |||
|---|---|---|---|
| Habit | tufted, decumbent annual | tufted, slender annual | tufted annual |
| Culms | up to 22 cm tall × 0.2–0.3 mm thick | up to 60 cm tall × 1.5 mm thick | up to 55 cm long × 0.3–1 mm thick |
| Leaves | up to 26 cm × 1.0–1.2 mm wide, densely hairy; contraligule convex and densely hairy | up to 15 cm long × 2–3 mm wide, glabrous or pubescent; contraligule indistinct with a fringe of hairs | up to 55 cm long or longer × 1–3 mm wide; glabrous to hairy; sheaths mostly glabrous but sometimes villous, especially at the truncated contraligule |
| Inflorescence | up to 9 cm long, slightly branched mostly in lower part; branches up to 1 cm | up to 35 cm long, unbranched | up to 13 cm, unbranched |
| Glomerules | max. 6 on main axis; each with (2–)4 spikelets | 9–13, each with 3–7 spikelets | 4–15, each with 3–6 spikelets |
| Spikelet | 4–4.5 mm long | 2.6–3.5 mm long | 3–4 mm long |
| Glumes | lower glumes hairy along the midrib | lower (pistillate) glumes beset with hyaline hairs all over the surface | all glumes with withish hairs all over the surface |
| Nutlets | 1.3–1.6 × 0.8 mm, globose-ovoid, surface slightly trabeculate | 1.6–1.8 × 0.9–1.4 mm, globose to subglobose, surface smooth or sparsely tuberculate | 1.25–1.6 × 1.1–1.3 mm, trigonous on cross-section, oblong-ovoid (oblong-globose), surface undulate-trabeculate to lacunose |
| Distribution | Madagascar | Central and South America, West Indies | Tropical Africa |
Comparison between S. liberica, S. interrupta and S. tricholepis.
| Character | |||
|---|---|---|---|
| Habit | tufted annual | loosely tufted annual | tufted annual |
| Culms | up to 26 cm tall × 0.3–0.5 mm thick | up to 50 cm tall × max. 1.5 mm thick | up to 55 cm long × 0.3–1 mm thick |
| Leaves | as long as or longer than culms; hairy with long white hairs on the vains of the upper surface, sheaths hairy on contraligule side; contraligule truncate, covered with white hairs | up to 20 cm × 1–2 mm, pubescent; sheaths pubescent; contraligule unpronounced with tuft of hairs | as long as or longer than culms × 1–3 mm wide; glabrous to hairy; sheaths mostly glabrous but sometimes hairy, especially at the truncate contraligule |
| Inflorescence | 4–7.5 cm long, unbranched | up to 10 cm long, unbranched | up to 13 cm, unbranched |
| Glomerules | 4–7, each with 2–5 spikelets | 5–13, each with 2–6 spikelets | 4–15, each with 3–6 spikelets |
| Spikelet | 2.5–4 mm long | 2–4 mm long | 3–4 mm long |
| Glumes | glabrous or slightly hairy | with long white (0.3 mm), sometimes dark brown hairs | with withish hairs all over |
| Nutlets | 1.1–1.2 × 0.9–1.0 mm, surface reticulate to trabeculate | 1–1.5 × 1.2–1.4 mm, globose, surface rugose-verrucose or tuberculate | 1.25–1.6 × 1.1–1.3 mm, oblong-ovoid (oblong-globose), surface undulate-trabeculate to lacunose |
| Distribution | Guinea and Liberia | Central and South America, West Indies | Tropical Africa |
Comparison between S. maypurensis and S. verticillata.
| Character | ||
|---|---|---|
| Habit | solitary annual | tufted annual |
| Culms | up to 25 cm tall, 0.4–0.5 mm wide, glabrous | up to 60 cm tall, glabrous to pubescent |
| Leaves | up to 18 cm long, 0.7–1.2 mm wide, glabrous | up to 30 cm long, shorter than the culms, 0.5–3.0 mm wide, glabrous to pubescent |
| Inflorescence | 7.5–9.5 cm long, rarely branched in axil of lowest glomerule, these branches up to 1 cm long | up to 15 cm long, unbranched |
| Glomerules | 2–10, each with 2–4 spikelets | 2–9, each with 2–5 spikelets |
| Spikelet | 3–4 mm long | 2–3 mm long, appearing as if verticillate |
| Glumes | glabrous | glabrous |
| Nutlets | 1.5 mm long, 1.0 mm wide, white with three darker stripes, subglobose, surface roughly tuberculate, stipe covered with translucent tissue, no pores visible | 1–1.5 mm long, sometimes purplish, globose to trigonous, reticulate to verrucose, mucronate,; with 4–5 pores on each side |
| Distribution | Venezuela | Canada and USA |
Comparison between S. melanotricha and S. mongomoensis.
| Character | ||
|---|---|---|
| Habit | densely villous annual | densely villous annual, sometimes decumbent |
| Culms | up to 45(–60) cm tall, 0.5–1 mm thick, glabrous or sparsely villous | up to 35(–90) cm tall, 0.5–1.2 mm thick, covered with long white hairs (up to 0.5 mm) |
| Leaves | 1–2 mm wide, usually subdensely villous but sometimes sparsely so; contraligule truncate, hairy | 1.5–3.0(–3.5) mm wide, densely hairy; contraligule straight to slightly convex, covered with long white hairs (up to 0.5 mm) |
| Inflorescence | 3–20 cm long, spicate, rarely shortly branched in the lower part | up to 12 cm long, unbranched |
| Glomerules | 5–17, reflexed, often very shortly stalked | 4–7, reflexed, sometimes spreading, slightly stalked |
| Spikelet | 3–5 mm long | 3–5.5 mm long |
| Glumes | densely hairy; with blackish, bristly hairs, mainly along midrib | densely hairy; with blackish, bristly hairs, all over |
| Nutlets | 1–1.75 mm long, 0.8–1.6 mm broad, broadly ovoid or almost globose, surface tuberculate-trabeculate, blackish with raised parts of the surface appearing whitish | 1.4–1.5 mm long, 1.3–1.5 mm broad, subglobose, trigonous on cross section, with tree oval lobes, surface tuberculate-trabeculate, with 4 pores on each side |
| Distribution | Tropical Africa | Equatorial Guinea |
Comparison between S. afroreflexa and S. pedicellata.
| Character | ||
|---|---|---|
| Habit | delicate annual | loosely tufted, slightly decumbent annaul |
| Culms | 10–50 cm × 0.3–0.8 mm, glabrous to sparseley hairy | 35–50 cm × 0.4–0.5 mm thick, glabrous |
| Leaves | blades 2–9 cm long × 0.8–1.8 mm, with spreading transparent hairs at least on margin and major nerves | blades up to 17 cm long × 1.5–3.5 mm, glabrous |
| Inflorescence | 3–9 cm long, with branches of 1–2 cm, these branches often reflexed | up to 10 cm, unbranched, although the stalked glomerules occassionaly do form branches (only 2.5 mm long) |
| Glomerules | 5–9 on the main axis, branches with 1–3 glomerules, each containing 2–10 spikelets, always reflexed | 3–7, each containing 3–4 spikelets, always reflexed |
| Spikelet | 3–4 mm long | 4–5 mm long |
| Glumes | midrib slightly scabrid | completely glabrous |
| Nutlets | 1.0–1.1 mm × 0.7–0.8 mm, obtusely triangular with 3 oval lobes above and more sharpy triangular base, surface transversely wrinkled | 1.2–1.5 mm × 1.2–1.3 mm, globose, without lobes, surface trabeculate |
| Distribution | Western Cameroon | Gabon |
Comparison between S. hispidior and S. pseudohispidior.
| Character | ||
|---|---|---|
| Habit | slender, hairy, tufted annual | loosely tufted, hairy annual |
| Culms | 10–30 cm long, 0.6–0.8 mm thick, glabrous to densely villous | 35–55 cm long, 0.8–1 mm thick, hairy with long white hairs (up to 0.5 mm) |
| Leaves | 1–2.25 mm wide, usually subdensely hairy with white hairs (0.2–0.3 mm) | 1.5–3.9 mm wide, with long white hairs (up to 0.5 mm) |
| Inflorescence | 3–7 cm long | up to 17 cm long |
| Glomerules | 3–7, each containing 2–6 crowded spikelets | 4–9 distant glomerules, each containing 2–4 spikelets |
| Spikelet | 3–6 mm long | 5–6 mm long |
| Glumes | covered with blackish hairs | covered with whitish hairs |
| Nutlets | 1.2–1.4 mm long, 0.8–1 mm broad, trigonous-globose, surface rugose-trabeculate to muricate | 1.8 mm long, 1.4 mm broad, ovoid, surface trabeculate to reticulate |
| Distribution | Ethiopia and Uganda | Ethiopia |