Literature DB >> 24177765

Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA.

Y Sun1, D Z Skinner, G H Liang, S H Hulbert.   

Abstract

The phylogenetic relationships of the genus Sorghum and related genera were studied by sequencing the nuclear ribosomal DNA (rDNA) internal transcribed spacer region (ITS). DNA was extracted from 15 Sorghum accessions, including one accession from each of the sections Chaetosorghum and Heterosorghum, four accessions from Parasorghum, two accessions from Stiposorghum, and seven representatives from three species of the section Sorghum (one accession from each of S. propinquum and S. halepense, and five races of S. bicolor). The maize (Zea mays) line, H95, and an accession from Cleistachne sorghoides were also included in the study. Variable nucleotides were used to construct a strict consensus phylogenetic tree. The analyses indicate that S. propinquum, S. halepense and S. bicolor subsp. arundinaceum race aethiopicum may be the closest wild relatives of cultivated sorghum; Sorghum nitidum may be the closest 2n=10 relative to S. bicolor, the sections Chaetosorghum and Heterosorghum appear closely related to each other and more closely related to the section Sorghum than Parasorghum; and the section Parasorghum is not monophyletic. The results also indicate that the genus Sorghum is a very ancient and diverse group.

Entities:  

Year:  1994        PMID: 24177765     DOI: 10.1007/BF00226978

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  15 in total

1.  Phylogenetic utility of the internal transcribed spacers of nuclear ribosomal DNA in plants: an example from the compositae.

Authors:  B G Baldwin
Journal:  Mol Phylogenet Evol       Date:  1992-03       Impact factor: 4.286

2.  Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms.

Authors:  T Helentjaris; D Weber; S Wright
Journal:  Genetics       Date:  1988-02       Impact factor: 4.562

3.  Nucleotide sequence of the 17S-25S spacer region from rice rDNA.

Authors:  F Takaiwa; K Oono; M Sugiura
Journal:  Plant Mol Biol       Date:  1985-11       Impact factor: 4.076

4.  Genetic mapping and characterization of sorghum and related crops by means of maize DNA probes.

Authors:  S H Hulbert; T E Richter; J D Axtell; J L Bennetzen
Journal:  Proc Natl Acad Sci U S A       Date:  1990-06       Impact factor: 11.205

5.  THE ORIGIN OF SORGHUM BICOLOR. II. DISTRIBUTION AND DOMESTICATION.

Authors:  J M J de Wet; J P Huckabay
Journal:  Evolution       Date:  1967-12       Impact factor: 3.694

6.  Nucleotide sequences of the 5.8S rRNA gene and internal transcribed spacer regions in carrot and broad bean ribosomal DNA.

Authors:  Y Yokota; T Kawata; Y Iida; A Kato; S Tanifuji
Journal:  J Mol Evol       Date:  1989-10       Impact factor: 2.395

7.  Genomic organization of the ribosomal DNA of sorghum and its close relatives.

Authors:  P S Springer; E A Zimmer; J L Bennetzen
Journal:  Theor Appl Genet       Date:  1989-06       Impact factor: 5.699

8.  The genomic relationship between cultivated sorghum [Sorghum bicolor (L.) Moench] and Johnsongrass [S. halepense (L.) Pers.]: a re-evaluation.

Authors:  G H Liang
Journal:  Theor Appl Genet       Date:  1988-08       Impact factor: 5.699

9.  A detailed RFLP map of Sorghum bicolor x S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments.

Authors:  L M Chittenden; K F Schertz; Y R Lin; R A Wing; A H Paterson
Journal:  Theor Appl Genet       Date:  1994-03       Impact factor: 5.699

10.  Comparative genome mapping of Sorghum and maize.

Authors:  R Whitkus; J Doebley; M Lee
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

View more
  88 in total

1.  Molecular systematics, GISH and the origin of hybrid taxa in Nicotiana (Solanaceae).

Authors:  Mark W Chase; Sandra Knapp; Antony V Cox; James J Clarkson; Yelena Butsko; Jeffrey Joseph; Vincent Savolainen; Alex S Parokonny
Journal:  Ann Bot       Date:  2003-07       Impact factor: 4.357

2.  The uneven phylogeny and biogeography of Erodium (Geraniaceae): radiations in the Mediterranean and recent recurrent intercontinental colonization.

Authors:  Omar Fiz-Palacios; Pablo Vargas; Roger Vila; Alexander S T Papadopulos; Juan José Aldasoro
Journal:  Ann Bot       Date:  2010-09-20       Impact factor: 4.357

3.  60 million years of co-divergence in the fig-wasp symbiosis.

Authors:  Nina Rønsted; George D Weiblen; James M Cook; Nicolas Salamin; Carlos A Machado; Vincent Savolainen
Journal:  Proc Biol Sci       Date:  2005-12-22       Impact factor: 5.349

4.  Molecular phylogenetics of subtribe Aeridinae (Orchidaceae): insights from plastid matK and nuclear ribosomal ITS sequences.

Authors:  Hidayat Topik; Tomohisa Yukawa; Motomi Ito
Journal:  J Plant Res       Date:  2005-07-16       Impact factor: 2.629

5.  Systematic significance of seed morphology in veronica (plantaginaceae): a phylogenetic perspective.

Authors:  Luz M Muñoz-Centeno; Dirk C Albach; Jose A Sánchez-Agudo; M Montserrat Martínez-Ortega
Journal:  Ann Bot       Date:  2006-06-14       Impact factor: 4.357

6.  Genetic diversity for aluminum tolerance in sorghum.

Authors:  F F Caniato; C T Guimarães; R E Schaffert; V M C Alves; L V Kochian; A Borém; P E Klein; J V Magalhaes
Journal:  Theor Appl Genet       Date:  2007-01-25       Impact factor: 5.699

7.  Towards a Phylogeny for Coffea (Rubiaceae): identifying well-supported lineages based on nuclear and plastid DNA sequences.

Authors:  Olivier Maurin; Aaron P Davis; Michael Chester; Esther F Mvungi; Yasmina Jaufeerally-Fakim; Michael F Fay
Journal:  Ann Bot       Date:  2007-10-22       Impact factor: 4.357

8.  Phylogeny and comparative seed morphology of epiphytic and terrestrial species of Liparis (Orchidaceae) in Japan.

Authors:  Chie Tsutsumi; Tomohisa Yukawa; Nam Sook Lee; Chang Shook Lee; Masahiro Kato
Journal:  J Plant Res       Date:  2007-03-30       Impact factor: 2.629

9.  Friends or relatives? Phylogenetics and species delimitation in the controversial European orchid genus Ophrys.

Authors:  Dion S Devey; Richard M Bateman; Michael F Fay; Julie A Hawkins
Journal:  Ann Bot       Date:  2008-01-08       Impact factor: 4.357

10.  Epipactis helleborine shows strong mycorrhizal preference towards ectomycorrhizal fungi with contrasting geographic distributions in Japan.

Authors:  Yuki Ogura-Tsujita; Tomohisa Yukawa
Journal:  Mycorrhiza       Date:  2008-07-26       Impact factor: 3.387

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.